Azido-PEG4-(CH2)3-methyl ester
Azido-PEG4-(CH2)3-methyl ester is a heterobifunctional polyethylene glycol linker featuring an azide handle and a terminal methyl ester, with a PEG4 segment that provides aqueous solubility and conformational flexibility. The azide group serves as a versatile bioorthogonal functional handle for copper-free or copper-catalyzed azide–alkyne cycloaddition, enabling efficient conjugation to alkyne-bearing warheads, E3 ligands, or other PROTAC fragments under mild conditions. The (CH2)3 spacer and methyl ester endow the linker with a defined length and a reactive ester that can participate in standard esterification or subsequent hydrolysis to generate carboxylic acid for amide coupling, facilitating stepwise assembly of targeted degradation constructs. In PROTAC design, this type of linker helps tune the relative positioning and effective molarity of the recruiting ligand and target-binding moiety, which can strongly influence ternary complex formation and degradation potency.
Structure of 1835759-71-1
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This Azido-PEG4-(CH2)3-methyl ester linker is designed to serve as a versatile polyethylene glycol-based spacer bearing an azide handle and a methyl ester terminus, enabling modular assembly of PROTACs. Its ether-rich backbone can promote solubility and favorable linker flexibility, while the azide functionality supports efficient bioorthogonal conjugation strategies. The ester group provides a chemically addressable site for subsequent derivatization, facilitating the construction of targeted protein degraders.
Structure: The linker comprises an azide-functionalized PEG segment connected through aliphatic methylene spacers to a terminal methyl ester. It contains ether linkages along the PEG chain, saturated carbon–carbon and carbon–oxygen bonds, and an organic azide moiety. These features support hydrophilicity, conformational flexibility, and stable covalent linkage formation.
Reactivity: The azide group is compatible with azide–alkyne cycloaddition approaches commonly used for PROTAC conjugation, typically requiring copper(I) catalysis or copper-free variants depending on substrate sensitivity. The methyl ester can undergo standard ester-derivatization chemistry, such as nucleophilic substitution or hydrolysis followed by coupling, to install functional groups needed for ternary-complex architecture. Suitable conditions generally employ polar aprotic solvents and base or activating agents selected to preserve the azide and other reactive motifs.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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