dBET6

 CAS No.: 1950634-92-0  Cat No.: BP-400041 4.5  

dBET6 is a highly potent, cell-permeable BET-family PROTAC degrader that connects a BET bromodomain ligand to a cereblon ligand. Public sources describe it as a CRL4-cereblon-based degrader used to induce BRD4 degradation in cellular assays. The BET-binding element recognizes bromodomain acetyl-lysine reader pockets, while the cereblon-binding element recruits the E3 ligase complex required for ubiquitin transfer. In PROTAC design, dBET6 serves as a benchmark compound for studying efficient cereblon-mediated BET degradation. Mechanistically, it induces BET–PROTAC–cereblon ternary complexes, leading to ubiquitination and proteasome-dependent depletion of BRD4 and related BET proteins. It is useful for transcriptional regulation studies, BRD4 target validation, degrader kinetics assays, chemical-genetic degradation workflows, comparison with MZ1 or dBET1, and evaluation of factors that modulate cereblon-based degrader activity.

dBET6

Structure of 1950634-92-0

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PROTAC
Molecular Formula
C42H45ClN8O7S
Molecular Weight
841.37

* For research and manufacturing use only. Not for human or clinical use.

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Solubility
H2O : < 0.1 mg/mL (insoluble); DMSO : ≥ 100 mg/mL (118.85 mM)
Storage
Powder<br/>-20°C<br/>3 years<br/><br/><br/> <br/>4°C<br/>2 years<br/><br/><br/>In solvent<br/>-80°C<br/>6 months<br/><br/><br/> <br/>-20°C<br/>1 month
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Room temperature in continental US; may vary elsewhere
Synonyms
2-((S)-4-(4-Chlorophenyl)-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl)-N-(8-(2-((2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindolin-4-yl)oxy)acetamido)octyl)-acetamide
InChI Key
JGQPZPLJOBHHBK-UFXYQILXSA-N
InChI
InChI=1S/C42H45ClN8O7S/c1-23-24(2)59-42-35(23)37(26-13-15-27(43)16-14-26)46-29(38-49-48-25(3)50(38)42)21-33(53)44-19-8-6-4-5-7-9-20-45-34(54)22-58-31-12-10-11-28-36(31)41(57)51(40(28)56)30-17-18-32(52)47-39(30)55/h10-16,29-30H,4-9,17-22H2,1-3H3,(H,44,53)(H,45,54)(H,47,52,55)/t29-,30?/m0/s1
SMILES
CC1=C(SC2=C1C(=NC(C3=NN=C(N32)C)CC(=O)NCCCCCCCCNC(=O)COC4=CC=CC5=C4C(=O)N(C5=O)C6CCC(=O)NC6=O)C7=CC=C(C=C7)Cl)C
Mechanism

Target: Targets BET bromodomain proteins, especially BRD4, BRD3, and BRD2 for experimental targeted protein degradation studies.

Binding Site: Binds the BET bromodomain acetyl-lysine pocket and recruited E3 ligase ligand site to support productive ternary complex formation.

Mechanism of Action: dBET6 is designed for use in PROTAC or targeted protein degradation experiments directed toward BET bromodomain proteins, especially BRD4, BRD3, and BRD2. The bifunctional molecule links a target-recognition element to cereblon, promoting proximity between the protein of interest and ubiquitination machinery. Productive ternary-complex formation can drive polyubiquitination and proteasome-dependent target depletion, allowing researchers to compare pharmacological inhibition with protein removal. It is suitable for evaluating degradation potency, kinetics, pathway selectivity, and downstream signaling consequences in engineered or disease-relevant cellular models.

Applications

• PROTAC-Mediated Degradation: dBET6 is a potent and selective PROTAC that facilitates the targeted degradation of BET proteins. Researchers utilize dBET6 to study the role of BET proteins in transcriptional regulation and chromatin remodeling, providing insights into epigenetic mechanisms and potential therapeutic strategies for diseases linked to BET dysregulation.

• BET Protein Targeting: As a chemical probe, dBET6 enables the targeted degradation of BET family members, such as BRD4, in cellular models. This application is crucial for dissecting BET protein functions and understanding their involvement in cancer progression, offering a valuable tool for preclinical research in oncology.

• Epigenetic Research: dBET6 serves as an essential tool in the exploration of epigenetic landscapes by inducing the selective degradation of BET proteins. Researchers employ this PROTAC to elucidate the impact of BET inhibition on gene expression profiles, contributing to the development of novel epigenetic therapies.

• Mechanistic Studies: By leveraging dBET6, scientists can perform mechanistic studies on the ubiquitin-proteasome system's role in protein homeostasis. This application aids in the investigation of targeted protein degradation pathways, enhancing the understanding of cellular processes affected by protein turnover.

1. Degradation of BRD4 - a promising treatment approach not only for hematologic but also for solid cancer
Karin Bauer, Anna S Berghoff, Matthias Preusser, Gerwin Heller, Christoph C Zielinski, Peter Valent, Thomas W Grunt Am J Cancer Res. 2021 Feb 1;11(2):530-545.eCollection 2021.
Bromodomain (BRD) and extra-terminal (BET) proteins are epigenetic readers that regulate gene expression and promote cancer evolution. Pharmacological inactivation of BRD4 has recently been introduced as a promising anti-neoplastic approach that targets MYC oncogene expression. However, resistance against BRD4-targeting drugs has been described. We compared the efficacy of the small-molecule-type BET BRD inhibitor JQ1 with the recently developed BET protein degraders dBET1 and dBET6 in colon, breast, melanoma, ovarian, lung and prostate cancer cell lines. As determined by qPCR, all BRD4 targeting drugs dose-dependently decreased MYC expression, with dBET6 introducing the strongest downregulation of MYC. This correlated with the anti-proliferative activity of these drugs, which was at least one order of magnitude higher for dBET6 (IC50 0.001-0.5 µM) than for dBET1 or JQ1 (IC50 0.5-5 µM). Interestingly, when combined with commonly used cytotoxic therapeutics, dBET6 was found to promote anti-neoplastic effects and to counteract chemoresistance in most cancer cell lines. Moreover, JQ1 and both BET degraders strongly downregulated baseline and interferon-gamma induced expression of the immune checkpoint molecule PD-L1 in all cancer cell lines. Together, our data suggest that dBET6 outperforms first-generation BRD4 targeting drugs like dBET1 and JQ1, and decreases chemoresistance and immune resistance of cancer.
2. BET Bromodomain Proteins Function as Master Transcription Elongation Factors Independent of CDK9 Recruitment
Georg E Winter, Andreas Mayer, Dennis L Buckley, Michael A Erb, et al. Mol Cell. 2017 Jul 6;67(1):5-18.e19.doi: 10.1016/j.molcel.2017.06.004.Epub 2017 Jun 29.
Processive elongation of RNA Polymerase II from a proximal promoter paused state is a rate-limiting event in human gene control. A small number of regulatory factors influence transcription elongation on a global scale. Prior research using small-molecule BET bromodomain inhibitors, such as JQ1, linked BRD4 to context-specific elongation at a limited number of genes associated with massive enhancer regions. Here, the mechanistic characterization of an optimized chemical degrader of BET bromodomain proteins, dBET6, led to the unexpected identification of BET proteins as master regulators of global transcription elongation. In contrast to the selective effect of bromodomain inhibition on transcription, BET degradation prompts a collapse of global elongation that phenocopies CDK9 inhibition. Notably, BRD4 loss does not directly affect CDK9 localization. These studies, performed in translational models of T cell leukemia, establish a mechanism-based rationale for the development of BET bromodomain degradation as cancer therapy.
3. Versatile Nano-PROTAC-Induced Epigenetic Reader Degradation for Efficient Lung Cancer Therapy
Huan-Tian Zhang, Rui Peng, Sheng Chen, Ao Shen, Lixin Zhao, Wang Tang, Xiao-He Wang, Zhen-Yan Li, Zhen-Gang Zha, Mengmeng Yi, Lingmin Zhang Adv Sci (Weinh). 2022 Oct;9(29):e2202039.doi: 10.1002/advs.202202039.Epub 2022 Aug 21.
Recent evidence has indicated that overexpression of the epigenetic reader bromodomain-containing protein 4 (BRD4) contributes to a poor prognosis of lung cancers, and the suppression of its expression promotes cell apoptosis and leads to tumor shrinkage. Proteolysis targeting chimera (PROTAC) has recently emerged as a promising therapeutic strategy with the capability to precisely degrade targeted proteins. Herein, a novel style of versatile nano-PROTAC (CREATE (CRV-LLC membrane/DS-PLGA/dBET6)) is developed, which is constructed by using a pH/GSH (glutathione)-responsive polymer (disulfide bond-linked poly(lactic-co-glycolic acid), DS-PLGA) to load BRD4-targeted PROTAC (dBET6), followed by the camouflage with engineered lung cancer cell membranes with dual targeting capability. Notably, CREATE remarkably confers simultaneous targeting ability to lung cancer cells and tumor-associated macrophages (TAMs). The pH/GSH-responsive design improves the release of dBET6 payload from nanoparticles to induce pronounced apoptosis of both cells, which synergistically inhibits tumor growth in both subcutaneous and orthotopic tumor-bearing mouse model. Furthermore, the efficient tumor inhibition is due to the direct elimination of lung cancer cells and TAMs, which remodels the tumor microenvironment. Taken together, the results elucidate the construction of a versatile nano-PROTAC enables to eliminate both lung cancer cells and TAMs, which opens a new avenue for efficient lung cancer therapy via PROTAC.
ConcentrationVolumeMass1 mg5 mg10 mg
1 mM1.1885 mL5.9427 mL11.8854 mL
5 mM0.2377 mL1.1885 mL2.3771 mL
10 mM0.1189 mL0.5943 mL1.1885 mL
50 mM0.0238 mL0.1189 mL0.2377 mL

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