MS98

 CAS No.: 2376137-31-2  Cat No.: BP-400142 4.5  

MS98 is a selective AKT PROTAC degrader that recruits von Hippel-Lindau protein to induce degradation of AKT family kinases. Public sources identify AKT as the target class and VHL as the recruited ubiquitin-ligase component; the AKT-binding portion engages AKT isoforms, while the VHL ligand occupies the degrader’s ligase-recruiting end. The compound is therefore a useful example of VHL-based kinase degradation, in which productive ternary-complex formation rather than occupancy alone determines cellular protein removal. Mechanistically, MS98 brings AKT into proximity with VHL-associated ubiquitination machinery, leading to proteasome-mediated depletion of total AKT protein. It is valuable for dissecting AKT signaling, validating AKT protein dependence, comparing VHL recruitment with cereblon recruitment, assessing degradation selectivity among kinase homologs, and optimizing PROTAC linkers for serine/threonine kinase targets.

MS98

Structure of 2376137-31-2

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Category
PROTAC
Molecular Formula
C58H81ClN10O7S
Molecular Weight
1097.84
Related CAS
2376137-32-3 (TFA salt)

* For research and manufacturing use only. Not for human or clinical use.

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Solubility
Soluble in DMSO
Storage
Store at -20°C
IUPACName
N-[2-[[(2S)-2-(4-chlorophenyl)-3-[4-[(5R,7R)-7-hydroxy-5-methyl-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl]piperazin-1-yl]-3-oxopropyl]amino]ethyl]-N'-[(2S)-1-[(2S,4R)-4-hydroxy-2-[[(1S)-1-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]ethyl]carbamoyl]pyrrolidin-1-yl]-3,3-dimethyl-1-oxobutan-2-yl]dodecanediamide
Synonyms
N1-(2-(((S)-2-(4-chlorophenyl)-3-(4-((5R,7R)-7-hydroxy-5-methyl-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl)piperazin-1-yl)-3-oxopropyl)amino)ethyl)-N12-((S)-1-((2S,4R)-4-hydroxy-2-(((S)-1-(4-(4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-1-yl)-3,3-dimethyl-1-oxobutan-2-yl)dodecanediamide
Boiling Point
1237.6±65.0°C at 760 Torr
Density
1.238±0.06 g/cm3
InChI Key
QUWWUNJGSUEYJK-PYSDWBMZSA-N
InChI
InChI=1S/C58H81ClN10O7S/c1-37-31-47(71)51-50(37)54(63-35-62-51)67-27-29-68(30-28-67)56(75)45(41-21-23-43(59)24-22-41)33-60-25-26-61-48(72)15-13-11-9-7-8-10-12-14-16-49(73)66-53(58(4,5)6)57(76)69-34-44(70)32-46(69)55(74)65-38(2)40-17-19-42(20-18-40)52-39(3)64-36-77-52/h17-24,35-38,44-47,53,60,70-71H,7-16,25-34H2,1-6H3,(H,61,72)(H,65,74)(H,66,73)/t37-,38+,44-,45-,46+,47-,53-/m1/s1
SMILES
CC1CC(C2=C1C(=NC=N2)N3CCN(CC3)C(=O)C(CNCCNC(=O)CCCCCCCCCCC(=O)NC(C(=O)N4CC(CC4C(=O)NC(C)C5=CC=C(C=C5)C6=C(N=CS6)C)O)C(C)(C)C)C7=CC=C(C=C7)Cl)O
Mechanism

Target: MS98 targets pan-AKT kinases, including AKT1, AKT2, and AKT3 isoforms.

Binding site: Its AKT ligand binds the ATP-competitive catalytic pocket of AKT kinases.

Mechanism of action: MS98 is a VHL-recruiting AKT PROTAC designed to induce degradation rather than reversible kinase inhibition. The molecule bridges AKT isoforms with the von Hippel-Lindau E3 ubiquitin ligase, supporting ternary-complex formation, target ubiquitination, and proteasome-dependent depletion of total AKT. In targeted protein degradation studies, MS98 enables interrogation of AKT scaffold and kinase-dependent signaling, including effects on downstream PI3K/AKT pathway markers. Its pan-AKT degradation profile makes it useful for comparing isoform engagement, cellular degradation kinetics, and pathway suppression across AKT-dependent experimental models.

Applications

• PROTAC-Mediated Kinase Degradation: MS98 is utilized in research to selectively degrade kinases implicated in cancer progression. By harnessing the ubiquitin-proteasome system, MS98 facilitates the targeted degradation of specific kinase proteins, offering a powerful tool for elucidating kinase function and signaling pathways in oncogenic processes.

• Targeted Degradation of Nuclear Receptors: MS98 serves as a potent agent for the targeted degradation of nuclear receptors involved in hormone signaling. This application aids researchers in dissecting the roles of nuclear receptors in gene expression regulation, providing insights into their contributions to various physiological and pathological states.

• PROTAC-Assisted Epigenetic Modulation: Researchers employ MS98 to achieve targeted degradation of epigenetic regulators, enabling the study of chromatin dynamics and gene expression. By selectively degrading proteins that modify chromatin structure, MS98 assists in unraveling the complexities of epigenetic control mechanisms in cellular contexts.

• Investigating Protein-Protein Interactions: MS98 is instrumental in the targeted degradation of specific protein complexes, allowing scientists to study the consequences of disrupting protein-protein interactions. This application is crucial for understanding the structural and functional aspects of multiprotein assemblies in cellular signaling and regulation.

1. Nonclinical evaluation of the serum pharmacodynamic biomarkers HGF and shed MET following dosing with the anti-MET monovalent monoclonal antibody onartuzumab
Ellen Filvaroff, William Mallet, Youjun Chen, Jing Peng, Elaine Mai, Judy C Young, Zhong Zheng, Surinder Kaur, Mark Merchant, Thomas Gelzleichter, Mally Romero, Ihsan Nijem, Christophe Severin Mol Cancer Ther . 2014 Feb;13(2):540-52. doi: 10.1158/1535-7163.MCT-13-0494.
Onartuzumab, a humanized, monovalent monoclonal anti-MET antibody, antagonizes MET signaling by inhibiting binding of its ligand, hepatocyte growth factor (HGF). We investigated the effects of onartuzumab on cell-associated and circulating (shed) MET (sMET) and circulating HGF in vitro and nonclinically to determine their utility as pharmacodynamic biomarkers for onartuzumab. Effects of onartuzumab on cell-associated MET were assessed by flow cytometry and immunofluorescence. sMET and HGF were measured in cell supernatants and in serum or plasma from multiple species (mouse, cynomolgus monkey, and human) using plate-based immunoassays. Unlike bivalent anti-MET antibodies, onartuzumab stably associates with MET on the surface of cells without inducing MET internalization or shedding. Onartuzumab delayed the clearance of human xenograft tumor-produced sMET from the circulation of mice, and endogenous sMET in cynomolgus monkeys. In mice harboring MET-expressing xenograft tumors, in the absence of onartuzumab, levels of human sMET correlated with tumor size, and may be predictive of MET-expressing tumor burden. Because binding of sMET to onartuzumab in circulation resulted in increasing sMET serum concentrations due to reduced clearance, this likely renders sMET unsuitable as a pharmacodynamic biomarker for onartuzumab. There was no observed effect of onartuzumab on circulating HGF levels in xenograft tumor-bearing mice or endogenous HGF in cynomolgus monkeys. Although sMET and HGF may serve as predictive biomarkers for MET therapeutics, these data do not support their use as pharmacodynamic biomarkers for onartuzumab.
2. Design, Synthesis, and Evaluation of Potent, Selective, and Bioavailable AKT Kinase Degraders
Xian Chen, Kaitlyn M Cahuzac, Xufen Yu, Jing Liu, Yudao Shen, Jian Jin, Ramon E Parsons, Li Wang, Jia Xu, Ling Xie J Med Chem . 2021 Dec 23;64(24):18054-18081. doi: 10.1021/acs.jmedchem.1c01476.
The serine/threonine kinase AKT functions as a critical node of the phosphatidylinositol 3-kinase (PI3K)/AKT/mammalian target of rapamycin (m-TOR) signaling pathway. Aberrant activation and overexpression of AKT are strongly correlated with numerous human cancers. To date, only two AKT degraders with no structure-activity relationship (SAR) results have been reported. Through extensive SAR studies on various linkers, E3 ligase ligands, and AKT binding moieties, we identified two novel and potent AKT proteolysis targeting chimera (PROTAC) degraders: von Hippel-Lindau (VHL)-recruiting degrader13(MS98) and cereblon (CRBN)-recruiting degrader25(MS170). These two compounds selectively induced robust AKT protein degradation, inhibited downstream signaling, and suppressed cancer cell proliferation. Moreover, these two degraders exhibited good plasma exposure levels in mice through intraperitoneal injection. Overall, our comprehensive SAR studies led to the discovery of degraders13and25, which are potentially useful chemical tools to investigate biological and pathogenic functions of AKT in vitro and in vivo.

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It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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