Navitoclax is a BCL-family ligand that binds anti-apoptotic proteins such as BCL-XL and BCL-2 through their BH3-binding grooves and has served as a foundational warhead for BCL-family degrader research. In PROTAC design, a navitoclax-derived moiety provides target recognition, while a linker connects it to an E3 ligase recruiter to bring the bound anti-apoptotic protein into proximity with ubiquitination machinery. The resulting ternary complex can promote ubiquitination and proteasome-mediated depletion of selected BCL-family proteins. This degradation strategy is valuable for studying apoptosis regulation, protein-protein interaction disruption, selective depletion of survival proteins, and differences between binding antagonism and protein removal. Navitoclax-derived degraders are useful for BCL-XL and BCL-2 degradation studies, linker optimization, recruiter selection, and selectivity engineering across closely related anti-apoptotic targets.
Structure of 923564-51-6
* For research and manufacturing use only. Not for human or clinical use.
| Size | Price | Stock | Quantity |
|---|---|---|---|
| 100 mg | $199 | In stock |
Looking for different specifications? Click to request a custom quote!
Capabilities & Facilities
Popular Publications Citing BOC Sciences Products
Target: This ligand targets anti-apoptotic BCL-2 family proteins BCL-2, BCL-XL, and BCL-W in biochemical or cellular target-engagement studies.
Mechanism of Action: Used as the target-protein recognition element, this ligand provides the binding interface for anti-apoptotic BCL-2 family proteins BCL-2, BCL-XL, and BCL-W. In PROTAC design, a derivatizable position on the ligand can be connected through an optimized linker to an E3 ligase ligand, such as a CRBN, VHL, or IAP recruiter, while preserving productive target engagement. The resulting bifunctional molecule brings anti-apoptotic BCL-2 family proteins BCL-2 into proximity with the recruited E3 ligase, enabling ternary-complex formation. If the complex has favorable geometry and residence time, target lysine ubiquitination is promoted, leading to proteasome-dependent degradation in experimental systems.
Applications• BH3 Mimetic PROTAC Design: Navitoclax can be used as a BH3-mimetic ligand to recruit pro-apoptotic BCL-2 family proteins in PROTAC constructs. By coupling Navitoclax to an E3 ligase binder, researchers can drive ubiquitination and proteasomal degradation of target BCL-2 proteins, enabling mechanistic studies of apoptosis regulation and sensitivity modulation.
• BCL-2 Family Degradation Studies: Navitoclax-based PROTACs are suited for dissecting the functional redundancy among BCL-2, BCL-xL, and BCL-w by selectively degrading individual family members. This approach supports comparative analyses of downstream caspase activation, mitochondrial outer membrane permeabilization, and cell-death pathway engagement under controlled degradation rather than occupancy-only conditions.
• Apoptosis Pathway Mechanism Probing: Employing Navitoclax in targeted protein degradation workflows allows researchers to test whether sustained removal of BCL-2 family proteins produces stronger or qualitatively different apoptotic outcomes than transient inhibition. Time-resolved degradation assays and phenotypic readouts can clarify how degradation kinetics shape apoptotic commitment and resistance mechanisms.
• E3 Ligase Recruitment Optimization: Navitoclax can serve as the target-binding module while varying E3 ligase recruiters to tune degradation potency, selectivity, and cellular ubiquitination efficiency. Systematic PROTAC optimization can identify E3 partners that best support productive ternary complex formation, guiding the design of next-generation chimeras for BCL-2 family-directed degradation.
| ConcentrationVolumeMass | 1 mg | 5 mg | 10 mg |
|---|---|---|---|
| 1 mM | 1.0261 mL | 5.1303 mL | 10.2605 mL |
| 5 mM | 0.2052 mL | 1.0261 mL | 2.0521 mL |
| 10 mM | 0.1026 mL | 0.5130 mL | 1.0261 mL |
| 50 mM | 0.0205 mL | 0.1026 mL | 0.2052 mL |
Navitoclax is a BCL-family protein ligand intended for use as the target-engaging component or reference ligand in PROTAC discovery workflows. Its known small-molecule recognition profile enables rational linker-vector evaluation and comparative degrader design. This molecule is described in detail below.
Structure: The structure of Navitoclax is characterized by primary or secondary amine/basic nitrogen centers; amide/urea/sulfonamide hydrogen-bonding motifs; halogenated aryl/heteroaryl ring system. These features provide defined hydrogen-bonding, hydrophobic, and steric elements that can support affinity retention while enabling analogue-based linker-vector selection.
Reactivity: The amine/basic nitrogen-containing motif can be evaluated for acylation, sulfonylation, alkylation, or carbamate/urea linker installation when that vector is solvent exposed. For PROTAC construction, the POI ligand can be paired with CRBN ligands such as thalidomide, pomalidomide, or lenalidomide analogues, VHL ligands such as VH032 derivatives, or less common IAP/MDM2/cIAP-recruiting ligands, with alkyl, PEG, piperazine, triazole, or amide linkers screened for ternary-complex formation. In practice, incorporation into PROTACs should begin from derivatives that preserve the reported binding pharmacophore, followed by systematic variation of linker length, polarity, rigidity, and exit-vector geometry to optimize target engagement, E3 recruitment, and cellular degradation readouts.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
Please contact us with any specific requirements and we will get back to you as soon as possible.