Navitoclax

 CAS No.: 923564-51-6  Cat No.: BP-300089  Purity: 98%  HNMR  MS 4.5  

Navitoclax is a BCL-family ligand that binds anti-apoptotic proteins such as BCL-XL and BCL-2 through their BH3-binding grooves and has served as a foundational warhead for BCL-family degrader research. In PROTAC design, a navitoclax-derived moiety provides target recognition, while a linker connects it to an E3 ligase recruiter to bring the bound anti-apoptotic protein into proximity with ubiquitination machinery. The resulting ternary complex can promote ubiquitination and proteasome-mediated depletion of selected BCL-family proteins. This degradation strategy is valuable for studying apoptosis regulation, protein-protein interaction disruption, selective depletion of survival proteins, and differences between binding antagonism and protein removal. Navitoclax-derived degraders are useful for BCL-XL and BCL-2 degradation studies, linker optimization, recruiter selection, and selectivity engineering across closely related anti-apoptotic targets.

Navitoclax

Structure of 923564-51-6

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Ligand for Target Protein
Molecular Formula
C47H55ClF3N5O6S3
Molecular Weight
974.611
Appearance
Solid Powder

* For research and manufacturing use only. Not for human or clinical use.

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100 mg $199 In stock

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Popular Publications Citing BOC Sciences Products
Purity
98%
Appearance
Solid Powder
Application
Antineoplastic Agents
IUPACName
4-[4-[[2-(4-chlorophenyl)-5,5-dimethylcyclohexen-1-yl]methyl]piperazin-1-yl]-N-[4-[[(2R)-4-morpholin-4-yl-1-phenylsulfanylbutan-2-yl]amino]-3-(trifluoromethylsulfonyl)phenyl]sulfonylbenzamide
Synonyms
ABT-263; ABT 263; ABT263; 4-[4-[[2-(4-chlorophenyl)-5,5-dimethylcyclohexen-1-yl]methyl]piperazin-1-yl]-N-[4-[[(2R)-4-morpholin-4-yl-1-phenylsulfanylbutan-2-yl]amino]-3-(trifluoromethylsulfonyl)phenyl]sulfonylbenzamide
InChI Key
JLYAXFNOILIKPP-KXQOOQHDSA-N
InChI
InChI=1S/C47H55ClF3N5O6S3/c1-46(2)20-18-42(34-8-12-37(48)13-9-34)36(31-46)32-55-22-24-56(25-23-55)39-14-10-35(11-15-39)45(57)53-65(60,61)41-16-17-43(44(30-41)64(58,59)47(49,50)51)52-38(19-21-54-26-28-62-29-27-54)33-63-40-6-4-3-5-7-40/h3-17,30,38,52H,18-29,31-33H2,1-2H3,(H,53,57)/t38-/m1/s1
SMILES
CC1(CCC(=C(C1)CN2CCN(CC2)C3=CC=C(C=C3)C(=O)NS(=O)(=O)C4=CC(=C(C=C4)NC(CCN5CCOCC5)CSC6=CC=CC=C6)S(=O)(=O)C(F)(F)F)C7=CC=C(C=C7)Cl)C
Mechanism

Target: This ligand targets anti-apoptotic BCL-2 family proteins BCL-2, BCL-XL, and BCL-W in biochemical or cellular target-engagement studies.

Mechanism of Action: Used as the target-protein recognition element, this ligand provides the binding interface for anti-apoptotic BCL-2 family proteins BCL-2, BCL-XL, and BCL-W. In PROTAC design, a derivatizable position on the ligand can be connected through an optimized linker to an E3 ligase ligand, such as a CRBN, VHL, or IAP recruiter, while preserving productive target engagement. The resulting bifunctional molecule brings anti-apoptotic BCL-2 family proteins BCL-2 into proximity with the recruited E3 ligase, enabling ternary-complex formation. If the complex has favorable geometry and residence time, target lysine ubiquitination is promoted, leading to proteasome-dependent degradation in experimental systems.

Applications

• BH3 Mimetic PROTAC Design: Navitoclax can be used as a BH3-mimetic ligand to recruit pro-apoptotic BCL-2 family proteins in PROTAC constructs. By coupling Navitoclax to an E3 ligase binder, researchers can drive ubiquitination and proteasomal degradation of target BCL-2 proteins, enabling mechanistic studies of apoptosis regulation and sensitivity modulation.

• BCL-2 Family Degradation Studies: Navitoclax-based PROTACs are suited for dissecting the functional redundancy among BCL-2, BCL-xL, and BCL-w by selectively degrading individual family members. This approach supports comparative analyses of downstream caspase activation, mitochondrial outer membrane permeabilization, and cell-death pathway engagement under controlled degradation rather than occupancy-only conditions.

• Apoptosis Pathway Mechanism Probing: Employing Navitoclax in targeted protein degradation workflows allows researchers to test whether sustained removal of BCL-2 family proteins produces stronger or qualitatively different apoptotic outcomes than transient inhibition. Time-resolved degradation assays and phenotypic readouts can clarify how degradation kinetics shape apoptotic commitment and resistance mechanisms.

• E3 Ligase Recruitment Optimization: Navitoclax can serve as the target-binding module while varying E3 ligase recruiters to tune degradation potency, selectivity, and cellular ubiquitination efficiency. Systematic PROTAC optimization can identify E3 partners that best support productive ternary complex formation, guiding the design of next-generation chimeras for BCL-2 family-directed degradation.

1.Augmented efficacy of brentuximab vedotin combined with ruxolitinib and/or Navitoclax in a murine model of human Hodgkin's lymphoma.
Ju W1, Zhang M2, Wilson KM3, Petrus MN1, Bamford RN4, Zhang X3, Guha R3, Ferrer M3, Thomas CJ3, Waldmann TA5. Proc Natl Acad Sci U S A. 2016 Feb 9;113(6):1624-9. doi: 10.1073/pnas.1524668113. Epub 2016 Jan 25.
Despite relative success of therapy for Hodgkin's lymphoma (HL), novel therapeutic agents are needed for patients with refractory or relapsed disease. Recently, anti-PD1 immunotherapy or treatment with the anti-CD30 toxin conjugate brentuximab vedotin (BV) have been associated with remissions; however, the median responses of complete responses (CRs) with the latter were only 6.7 mo. To obtain curative therapy, other effective agents, based on HL biology, would have to be given in combination with BV. Hodgkin's Reed-Sternberg (HRS) cells secrete cytokines including IL-6 and -13, leading to constitutive activation of JAK/STAT signaling. In the present study the JAK1/2 inhibitor ruxolitinib reduced phosphorylation of STAT3 and STAT6 and expression of c-Myc in the HL cell line HDLM-2. These changes were enhanced when, on the basis of a matrix screen of drug combinations, ruxolitinib was combined with the Bcl-2/Bcl-xL inhibitor Navitoclax. The combination augmented expression of Bik, Puma, and Bax, and attenuated Bcl-xL expression and the phosphorylation of Bad.
2.Antagonism of Bcl-XL is necessary for synergy between carboplatin and BH3 mimetics in ovarian cancer cells.
Abed MN1, Abdullah MI1, Richardson A2,3. J Ovarian Res. 2016 Apr 14;9(1):25. doi: 10.1186/s13048-016-0234-y.
BACKGROUND: BH3 mimetics are a class of drugs that antagonize the Bcl-2 family of apoptosis inhibitors. We have previously shown that these compounds can potentiate the activity of carboplatin against several ovarian cancer cell lines. However, recent clinical studies have highlighted that BH3 mimetics which antagonise Bcl-XL are associated with significant thrombocytopenia. This has led to the development of ABT-199 which specifically inhibits Bcl-2. Unfortunately, Bcl-XL appears to be more frequently deregulated in ovarian cancer than Bcl-2. We therefore compared the ability of ABT-199, and the Bcl-XL selective compound WEHI-539, to potentiate the activity of carboplatin in ovarian cancer cell lines.
3.Inhibition of MARCH5 ubiquitin ligase abrogates MCL1-dependent resistance to BH3 mimetics via NOXA.
Subramanian A1, Andronache A1, Li YC2, Wade M1. Oncotarget. 2016 Feb 21. doi: 10.18632/oncotarget.7558. [Epub ahead of print]
BH3 mimetic compounds induce tumor cell death through targeted inhibition of anti-apoptotic BCL2 proteins. Resistance to one such compound, ABT-737, is due to increased levels of anti-apoptotic MCL1. Using chemical and genetic approaches, we show that resistance to ABT-737 is abrogated by inhibition of the mitochondrial RING E3 ligase, MARCH5. Mechanistically, this is due to increased expression of pro-apoptotic BCL2 family member, NOXA, and is associated with MARCH5 regulation of MCL1 ubiquitylation and stability in a NOXA-dependent manner. MARCH5 expression contributed to an 8-gene signature that correlates with sensitivity to the preclinical BH3 mimetic, navitoclax. Furthermore, we observed a synthetic lethal interaction between MCL1 and MARCH5 in MCL1-dependent breast cancer cells. Our data uncover a novel level at which the BCL2 family is regulated; furthermore, they suggest targeting MARCH5-dependent signaling will be an effective strategy for treatment of BH3 mimetic-resistant tumors, even in the presence of high MCL1.
4.Data on the DNA damaging and mutagenic potential of the BH3-mimetics ABT-263/Navitoclax and TW-37.
Green MM1, Shekhar TM1, Hawkins CJ1. Data Brief. 2016 Jan 16;6:710-4. doi: 10.1016/j.dib.2016.01.013. eCollection 2016.
Unfortunately, the mutagenic activities of chemotherapy and radiotherapy can provoke development of therapy-induced malignancies in cancer survivors. Non-mutagenic anti-cancer therapies may be less likely to trigger subsequent malignant neoplasms. Here we present data regarding the DNA damaging and mutagenic potential of two drugs that antagonize proteins within the Bcl-2 family: ABT-263/Navitoclax and TW-37. Our data reveal that concentrations of these agents that stimulated Bax/Bak-dependent signaling provoked little DNA damage and failed to trigger mutations in surviving cells. The data supplied in this article is related to the research work entitled "Inhibition of Bcl-2 or IAP proteins does not provoke mutations in surviving cells" [1].
ConcentrationVolumeMass1 mg5 mg10 mg
1 mM1.0261 mL5.1303 mL10.2605 mL
5 mM0.2052 mL1.0261 mL2.0521 mL
10 mM0.1026 mL0.5130 mL1.0261 mL
50 mM0.0205 mL0.1026 mL0.2052 mL

Navitoclax is a BCL-family protein ligand intended for use as the target-engaging component or reference ligand in PROTAC discovery workflows. Its known small-molecule recognition profile enables rational linker-vector evaluation and comparative degrader design. This molecule is described in detail below.

Structure: The structure of Navitoclax is characterized by primary or secondary amine/basic nitrogen centers; amide/urea/sulfonamide hydrogen-bonding motifs; halogenated aryl/heteroaryl ring system. These features provide defined hydrogen-bonding, hydrophobic, and steric elements that can support affinity retention while enabling analogue-based linker-vector selection.

Reactivity: The amine/basic nitrogen-containing motif can be evaluated for acylation, sulfonylation, alkylation, or carbamate/urea linker installation when that vector is solvent exposed. For PROTAC construction, the POI ligand can be paired with CRBN ligands such as thalidomide, pomalidomide, or lenalidomide analogues, VHL ligands such as VH032 derivatives, or less common IAP/MDM2/cIAP-recruiting ligands, with alkyl, PEG, piperazine, triazole, or amide linkers screened for ternary-complex formation. In practice, incorporation into PROTACs should begin from derivatives that preserve the reported binding pharmacophore, followed by systematic variation of linker length, polarity, rigidity, and exit-vector geometry to optimize target engagement, E3 recruitment, and cellular degradation readouts.

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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