PROTAC ER Degrader-4

 CAS No.: 2361114-15-8  Cat No.: BP-400136  Purity: ≥95% 4.5  

PROTAC ER Degrader-4 is a specialized chemical compound designed for targeted protein degradation, specifically focusing on the estrogen receptor (ER) as its primary target. This molecule is engineered to bind selectively to the ligand-binding domain of the ER, facilitating its role in PROTAC (Proteolysis Targeting Chimeras) design. The compound functions as a bifunctional molecule, linking the estrogen receptor to an E3 ubiquitin ligase via a carefully designed linker. This interaction promotes the ubiquitination and subsequent proteasomal degradation of the ER, effectively reducing its cellular levels. PROTAC ER Degrader-4 is instrumental in studying the mechanistic pathways of ER degradation, providing a valuable tool for researchers investigating hormone-dependent cancers and resistance mechanisms. Its application extends to exploring the dynamic regulation of protein homeostasis, offering insights into novel therapeutic strategies. This compound serves as a critical asset in the development of next-generation therapies, advancing the field of targeted protein degradation research.

PROTAC ER Degrader-4

Structure of 2361114-15-8

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PROTAC
Molecular Formula
C53H67F3N6O8S
Molecular Weight
1005.19

* For research and manufacturing use only. Not for human or clinical use.

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Purity
≥95%
Solubility
Soluble in DMSO
Storage
Store at -20°C, stored under nitrogen
IUPACName
(2S,4R)-1-[(2S)-2-[[2-[2-[2-[2-[3,5-difluoro-4-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-1,3,4,9-tetrahydropyrido[3,4-b]indol-1-yl]phenoxy]ethoxy]ethoxy]ethoxy]acetyl]amino]-3,3-dimethylbutanoyl]-4-hydroxy-N-[(1S)-1-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]ethyl]pyrrolidine-2-carboxamide
Synonyms
(2S,4R)-1-((S)-2-(tert-Butyl)-14-(3,5-difluoro-4-((1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indol-1-yl)phenoxy)-4-oxo-6,9,12-trioxa-3-azatetradecanoyl)-4-hydroxy-N-((S)-1-(4-(4-methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide; N-({2-[2-(2-{3,5-Difluoro-4-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-3-methyl-2,3,4,9-tetrahydro-1H-β-carbolin-1-yl]phenoxy}ethoxy)ethoxy]ethoxy}acetyl)-3-methyl-L-valyl-(4R)-4-hydroxy-N-{(1S)-1-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]ethyl}-L-prolinamide; L-Prolinamide, N-[2-[2-[2-[2-[3,5-difluoro-4-[(1R,3R)-2-(2-fluoro-2-methylpropyl)-2,3,4,9-tetrahydro-3-methyl-1H-pyrido[3,4-b]indol-1-yl]phenoxy]ethoxy]ethoxy]ethoxy]acetyl]-3-methyl-L-valyl-4-hydroxy-N-[(1S)-1-[4-(4-methyl-5-thiazolyl)phenyl]ethyl]-, (4R)-
Boiling Point
1038.9±65.0°C at 760 Torr
Density
1.254±0.06 g/cm3
InChI Key
WNWBHGDKGOSOKU-QIINAUKOSA-N
InChI
InChI=1S/C53H67F3N6O8S/c1-31-23-39-38-11-9-10-12-42(38)59-46(39)47(62(31)29-53(7,8)56)45-40(54)25-37(26-41(45)55)70-22-21-68-18-17-67-19-20-69-28-44(64)60-49(52(4,5)6)51(66)61-27-36(63)24-43(61)50(65)58-32(2)34-13-15-35(16-14-34)48-33(3)57-30-71-48/h9-16,25-26,30-32,36,43,47,49,59,63H,17-24,27-29H2,1-8H3,(H,58,65)(H,60,64)/t31-,32+,36-,43+,47-,49-/m1/s1
SMILES
CC1CC2=C(C(N1CC(C)(C)F)C3=C(C=C(C=C3F)OCCOCCOCCOCC(=O)NC(C(=O)N4CC(CC4C(=O)NC(C)C5=CC=C(C=C5)C6=C(N=CS6)C)O)C(C)(C)C)F)NC7=CC=CC=C27
Mechanism

Target: Targets estrogen receptor alpha (ERα) for experimental targeted protein degradation studies.

Binding Site: Binds the ERα ligand-binding domain and cereblon thalidomide-binding pocket to support productive ternary complex formation.

Mechanism of Action: PROTAC ER Degrader-4 is designed for use in PROTAC or targeted protein degradation experiments directed toward estrogen receptor alpha (ERα). The bifunctional molecule links a target-recognition element to cereblon, promoting proximity between the protein of interest and ubiquitination machinery. Productive ternary-complex formation can drive polyubiquitination and proteasome-dependent target depletion, allowing researchers to compare pharmacological inhibition with protein removal. It is suitable for evaluating degradation potency, kinetics, pathway selectivity, and downstream signaling consequences in engineered or disease-relevant cellular models.

Applications

• PROTAC-Mediated Estrogen Receptor Degradation: PROTAC ER Degrader-4 is designed to facilitate the targeted degradation of estrogen receptors, offering researchers a powerful tool to study the role of these receptors in various cellular processes. This approach allows for precise modulation of receptor levels to investigate their involvement in hormone-dependent cancers.

• Targeted Protein Degradation in Cancer Research: Utilizing PROTAC ER Degrader-4 enables scientists to explore the effects of selective estrogen receptor degradation in cancer cells. This method provides insights into receptor function and aids in the development of novel therapeutic strategies targeting hormone-driven malignancies.

• Mechanistic Studies of PROTAC Efficacy: PROTAC ER Degrader-4 serves as an effective model compound for examining the mechanistic aspects of PROTAC technology. Researchers can assess the efficiency of protein degradation pathways and optimize PROTAC design for enhanced specificity and potency in degrading target proteins.

• Investigating Hormone Receptor Signaling Pathways: By employing PROTAC ER Degrader-4, researchers can dissect the complex signaling pathways modulated by estrogen receptors. This tool allows for the elucidation of downstream effects following receptor degradation, contributing to a deeper understanding of cellular signaling dynamics.

1. Discovery of ERD-308 as a Highly Potent Proteolysis Targeting Chimera (PROTAC) Degrader of Estrogen Receptor (ER)
James Delproposto, Jeanne Stuckey, Mingliang Wang, Krishnapriya Chinnaswamy, Daniel F Hayes, Shaomeng Wang, Jiantao Hu, Mi Wang, Fuming Xu, Bukeyan Miao, Chao-Yie Yang, Biao Hu, Zhaomin Liu J Med Chem . 2019 Feb 14;62(3):1420-1442. doi: 10.1021/acs.jmedchem.8b01572.
The estrogen receptor (ER) is a validated target for the treatment of estrogen receptor-positive (ER+) breast cancer. Here, we describe the design, synthesis, and extensive structure-activity relationship (SAR) studies of small-molecule ERα degraders based on the proteolysis targeting chimeras (PROTAC) concept. Our efforts have resulted in the discovery of highly potent and effective PROTAC ER degraders, as exemplified by ERD-308 (32). ERD-308 achieves DC50(concentration causing 50% of protein degradation) values of 0.17 and 0.43 nM in MCF-7 and T47D ER+ breast cancer cell lines, respectively, and induces >95% of ER degradation at concentrations as low as 5 nM in both cell lines. Significantly, ERD-308 induces more complete ER degradation than fulvestrant, the only approved selective ER degrader (SERD), and is more effective in inhibition of cell proliferation than fulvestrant in MCF-7 cells. Further optimization of ERD-308 may lead to a new therapy for advanced ER+ breast cancer.
2. The Hydroxyquinoline Analogue YUM70 Inhibits GRP78 to Induce ER Stress-Mediated Apoptosis in Pancreatic Cancer
Kavya Ramkumar, Amy S Lee, Yuting Kuang, Suhui Yang, Mats Ljungman, Nouri Neamati, Soma Samanta, Bikash Debnath, Ding Xue Cancer Res . 2021 Apr 1;81(7):1883-1895. doi: 10.1158/0008-5472.CAN-20-1540.
GRP78 (glucose-regulated protein, 78 kDa) is a key regulator of endoplasmic reticulum (ER) stress signaling. Cancer cells are highly proliferative and have high demand for protein synthesis and folding, which results in significant stress on the ER. To respond to ER stress and maintain cellular homeostasis, cells activate the unfolded protein response (UPR) that promotes either survival or apoptotic death. Cancer cells utilize the UPR to promote survival and growth. In this study, we describe the discovery of a series of novel hydroxyquinoline GRP78 inhibitors. A representative analogue, YUM70, inhibited pancreatic cancer cell growthin vitroand showedin vivoefficacy in a pancreatic cancer xenograft model with no toxicity to normal tissues. YUM70 directly bound GRP78 and inactivated its function, resulting in ER stress-mediated apoptosis. A YUM70 analogue conjugated with BODIPY showed colocalization of the compound with GRP78 in the ER. Moreover, a YUM70-PROTAC (proteolysis targeting chimera) was synthesized to force degradation of GRP78 in pancreatic cancer cells. YUM70 showed a strong synergistic cytotoxicity with topotecan and vorinostat. Together, our study demonstrates that YUM70 is a novel inducer of ER stress, with preclinical efficacy as a monotherapy or in combination with topoisomerase and HDAC inhibitors in pancreatic cancer. SIGNIFICANCE: This study identifies a novel ER stress inducer that binds GRP78 and inhibits pancreatic cancer cell growthin vitroandin vivo, demonstrating its potential as a therapeutic agent for pancreatic cancer.
3. Selective inhibition of CDK4/6: A safe and effective strategy for developing anticancer drugs
Haiping Hao, Wenjian Min, Peng Yang, Haojie Dong, Kai Yuan, Xiao Wang Acta Pharm Sin B . 2021 Jan;11(1):30-54. doi: 10.1016/j.apsb.2020.05.001.
The sustained cell proliferation resulting from dysregulation of the cell cycle and activation of cyclin-dependent kinases (CDKs) is a hallmark of cancer. The inhibition of CDKs is a highly promising and attractive strategy for the development of anticancer drugs. In particular, third-generation CDK inhibitors can selectively inhibit CDK4/6 and regulate the cell cycle by suppressing the G1 to S phase transition, exhibiting a perfect balance between anticancer efficacy and general toxicity. To date, three selective CDK4/6 inhibitors have received approval from the U.S. Food and Drug Administration (FDA), and 15 CDK4/6 inhibitors are in clinical trials for the treatment of cancers. In this perspective, we discuss the crucial roles of CDK4/6 in regulating the cell cycle and cancer cells, analyze the rationale for selectively inhibiting CDK4/6 for cancer treatment, review the latest advances in highly selective CDK4/6 inhibitors with different chemical scaffolds, explain the mechanisms associated with CDK4/6 inhibitor resistance and describe solutions to overcome this issue, and briefly introduce proteolysis targeting chimera (PROTAC), a new and revolutionary technique used to degrade CDK4/6.

What is the starting material for the synthesis of PROTAC ER Degrader-4?

The starting material for the synthesis of PROTAC ER Degrader-4 is 4-hydroxytamoxifen (4HT). 4HT is a selective estrogen modulator (SERM) that binds to the estrogen receptor (ER) and blocks its activity. The DPT moiety is then attached to 4HT using a chemical reaction called a coupling reaction.

17/4/2020

Hi, what is the functional group of PROTAC ER Degrader-4?

PROTAC ER Degrader-4 is a small molecule that is a potent and selective Estrogen Receptor (ER) degrader. It is composed of two functional groups: a 4-hydroxytamoxifen (4HT) moiety and a diphenylphosphinothioate (DPT) moiety. The 4HT moiety is a selective ER modulator (SERM) that binds to the ER and blocks its activity. The DPT moiety is a small molecule that can bind to E3 ubiquitin ligases, which are proteins that tag other proteins for degradation. When PROTAC ER Degrader-4 binds to the ER, it recruits the DPT moiety to the ER. The DPT moiety then binds to an E3 ubiquitin ligase, which tags the ER for degradation. This leads to the degradation of the ER and the inhibition of ER signaling.

18/5/2021

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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