PROTAC FAK degrader 1

 CAS No.: 2301916-69-6  Cat No.: BP-400066 4.5  

PROTAC FAK degrader 1 is a highly specialized chemical compound designed for the targeted degradation of Focal Adhesion Kinase (FAK), a crucial protein involved in cellular adhesion and signal transduction. This degrader operates by binding to the ATP-binding site of FAK, effectively hijacking the ubiquitin-proteasome system to promote its degradation. Structurally, it is a bifunctional molecule that connects a FAK-binding ligand to an E3 ligase recruiter through a linker, facilitating the formation of a ternary complex. This complex brings the target protein and the E3 ubiquitin ligase into proximity, enabling ubiquitination and subsequent proteasomal degradation of FAK. The primary mechanism of action leverages the PROTAC technology to selectively degrade FAK, offering a powerful tool for dissecting FAK-related signaling pathways. In research applications, PROTAC FAK degrader 1 is invaluable for studying the role of FAK in cancer biology and other diseases, providing insights into therapeutic strategies that exploit protein degradation pathways. Its use in targeted degradation studies underscores its potential to advance the understanding of protein dynamics and cellular processes.

PROTAC FAK degrader 1

Structure of 2301916-69-6

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PROTAC
Molecular Formula
C47H56F3N9O8S2
Molecular Weight
996.13

* For research and manufacturing use only. Not for human or clinical use.

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Solubility
10 mM in DMSO
Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
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Room temperature in continental US; may vary elsewhere
SMILES
O=C(N[C@H](C(N1[C@H](C(NCC2=CC=C(C3=C(C)N=CS3)C=C2)=O)C[C@@H](O)C1)=O)C(C)(C)C)CCOCCOC4=CC=C(NC5=NC(NCC6=CC=CC(N(C)S(C)(=O)=O)=C6)=C(C(F)(F)F)C=N5)C=C4
Mechanism

Target: Targets estrogen receptor alpha (ERα) for experimental targeted protein degradation studies.

Binding Site: Binds the ERα ligand-binding domain and cereblon thalidomide-binding pocket to support productive ternary complex formation.

Mechanism of Action: PROTAC FAK degrader 1 is designed for use in PROTAC or targeted protein degradation experiments directed toward estrogen receptor alpha (ERα). The bifunctional molecule links a target-recognition element to cereblon, promoting proximity between the protein of interest and ubiquitination machinery. Productive ternary-complex formation can drive polyubiquitination and proteasome-dependent target depletion, allowing researchers to compare pharmacological inhibition with protein removal. It is suitable for evaluating degradation potency, kinetics, pathway selectivity, and downstream signaling consequences in engineered or disease-relevant cellular models.

Applications

• PROTAC-Mediated FAK Degradation: This product enables the selective degradation of Focal Adhesion Kinase (FAK), a crucial protein involved in cellular adhesion and migration processes. Researchers can utilize this tool to study the effects of FAK depletion on cell motility and signaling pathways, providing insights into cancer metastasis mechanisms.

• Targeted Protein Degradation in Cancer Research: PROTAC FAK degrader 1 facilitates the investigation of FAK's role in oncogenic signaling by promoting its ubiquitination and subsequent proteasomal degradation. This targeted approach aids in elucidating FAK-dependent pathways and their potential as therapeutic targets in oncology research.

• Exploring Signal Transduction Pathways: By employing this degrader, scientists can dissect the involvement of FAK in various signal transduction pathways. This application is pivotal for understanding how FAK influences cellular responses to external stimuli, thereby aiding in the development of targeted therapeutics.

• Studying Protein-Protein Interactions: The degradation of FAK using this PROTAC tool allows researchers to investigate FAK's interactions with other cellular proteins. This can reveal novel insights into the protein networks regulated by FAK, contributing to the broader understanding of cellular dynamics.

1. FAK-targeting PROTAC demonstrates enhanced antitumor activity against KRAS mutant non-small cell lung cancer
Jinyuan Liu, Lei Xue, Xiang Xu, Jinhua Luo, Shijiang Zhang Exp Cell Res. 2021 Nov 15;408(2):112868.doi: 10.1016/j.yexcr.2021.112868.Epub 2021 Oct 12.
Focal adhesion kinase (FAK) has been established as a promising therapeutic target for KRAS mutant non-small cell lung cancer (NSCLC). However, phase II clinical trials of a FAK inhibitor (Defactinib) have only shown modest antitumor activity. To address this challenge, here we report the use of a FAK-targeting proteolysis targeting chimera (D-PROTAC) to treat KRAS mutant NSCLC. We validated that D-PROTAC could efficiently eliminate FAK protein via the ubiquitin-proteasome pathway in KRAS mutant NSCLC A427 cells, causing over 90% degradation at 800 nM. After comparing both in vitro and in vivo therapeutic efficacies, we demonstrated that D-PRTOAC outperformed Defactinib in inhibiting tumor growth. Specifically, D-PROTAC at 800 nM reduced cell viability, migration, and invasion by ~80%. Furthermore, a ~85% suppression of tumor growth was elicited by D-PROTAC when intratumorally administrated at 10 mg/kg in subcutaneous A427-bearing mice. These results thus demonstrate for the first time that PROTACs may serve as promising therapeutic agents for the intractable NSCLC harboring KRAS mutations.
2. FAK inhibitors as promising anticancer targets: present and future directions
Muhamad Mustafa, Amer Ali Abd El-Hafeez, Dalia A Abdelhafeez, Dalia Abdelhamid, Yaser A Mostafa, Pradipta Ghosh, Alaa M Hayallah0, Gamal El-Din A Abuo-Rahma Future Med Chem. 2021 Sep;13(18):1559-1590.doi: 10.4155/fmc-2021-0015.Epub 2021 Aug 3.
FAK, a nonreceptor tyrosine kinase, has been recognized as a novel target class for the development of targeted anticancer agents. Overexpression of FAK is a common occurrence in several solid tumors, in which the kinase has been implicated in promoting metastases. Consequently, designing and developing potent FAK inhibitors is becoming an attractive goal, and FAK inhibitors are being recognized as a promising tool in our armamentarium for treating diverse cancers. This review comprehensively summarizes the different classes of synthetically derived compounds that have been reported as potent FAK inhibitors in the last three decades. Finally, the future of FAK-targeting smart drugs that are designed to slow down the emergence of drug resistance is discussed.
3. Addressing Kinase-Independent Functions of Fak via PROTAC-Mediated Degradation
Philipp M Cromm, Kusal T G Samarasinghe, John Hines, Craig M Crews J Am Chem Soc. 2018 Dec 12;140(49):17019-17026.doi: 10.1021/jacs.8b08008.Epub 2018 Nov 28.
Enzymatic inhibition has proven to be a successful modality for the development of many small-molecule drugs. In recent years, small-molecule-induced protein degradation has emerged as an orthogonal therapeutic strategy that has the potential to expand the druggable target space. Focal adhesion kinase (Fak) is a key player in tumor invasion and metastasis, acting simultaneously as a kinase and a scaffold for several signaling proteins. While previous efforts to modulate Fak activity were limited to kinase inhibitors with low success in clinical studies, protein degradation offers a possibility to simultaneously block Fak's kinase signaling and scaffolding capabilities. Here, we report the development of a selective and potent Fak degrader, PROTAC-3, which outperforms a clinical candidate, defactinib, with respect to Fak activation as well as Fak-mediated cell migration and invasion. These results underline the potential that PROTACs offer in expanding the druggable space and controlling protein functions that are not easily addressed by traditional small-molecule therapeutics.

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