t-Butyl acetate-PEG2-CH2COOH is a short, functionalized polyethylene glycol linker bearing a terminal carboxylic acid and a protected acetate motif. Structurally, it provides a flexible two–ethylene glycol unit spacer that separates a PROTAC warhead from the conjugation handle, while the terminal carboxyl group enables robust amide-bond formation to attach the linker to lysine/amine-bearing ligands or to activated acyl intermediates. In PROTAC design, such PEG-based linkers are widely used to tune linker length, reduce steric clashes, and improve productive ternary complex formation between the target-binding ligand and the E3 ligase recruiter. The acetate protection strategy can also facilitate stepwise synthesis by temporarily masking reactive functionality during coupling. This product is valuable for constructing degraders where controlled conjugation chemistry and minimal, flexible spacing are required to support efficient targeted protein degradation studies.
Structure of 883564-93-0
* For research and manufacturing use only. Not for human or clinical use.
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t-Butyl acetate-PEG2-CH2COOH, is designed to provide a flexible polyethylene glycol spacer while presenting a carboxylic acid handle for reliable conjugation to targeting ligands. Its PEG-based architecture can help modulate effective distance and local accessibility between the two binding modules, supporting efficient formation of ternary complexes in targeted protein degradation workflows. The sections below describe the structure and the practical reactivity considerations for PROTAC construction in detail.
Structure: The linker contains a short PEG segment that imparts conformational flexibility, connected through ether linkages to an acetate-derived protecting group and a terminal methylene carboxylic acid. The molecule features ester and carboxylic acid functional groups, with polar oxygen atoms that enhance solubility and enable hydrogen-bonding interactions.
Reactivity: The terminal carboxylic acid enables standard PROTAC assembly via amide or ester bond formation with amine-bearing ligands under coupling conditions commonly used for carboxylate activation. Typical strategies employ carbodiimide-based or uronium-based coupling reagents, often in polar aprotic solvents, to form stable linkages. The acetate functionality can be managed as a protecting group during synthesis, with deprotection handled under conditions appropriate to ester cleavage when required for downstream conjugation.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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