3,6,9,12,15,18,21,24,27,30-Decaoxatritriacont-32-yn-1-ol is a PEG-like, ether-rich linker featuring a terminal propargyl alcohol motif and an extended, repeating oxygenated chain that provides conformational flexibility and solvent compatibility. The multiple ether units act as a hydrophilic spacer between a ligand-binding warhead and an E3-recruiting module, helping to reduce steric clashes while maintaining productive geometry for ternary-complex formation in targeted protein degradation assays. The terminal alkynyl alcohol enables chemoselective functionalization, for example via click-type or alkyne-reactive coupling strategies, to install the linker into larger PROTAC architectures while preserving the chain’s length and polarity. In PROTAC design, such ether-rich spacers are widely used to tune linker length, polarity, and effective reach, often improving degradation potency and selectivity by optimizing the distance and orientation required for cooperative binding.
Structure of 2378150-09-3
* For research and manufacturing use only. Not for human or clinical use.
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This PROTAC linker is designed to provide a chemically robust connection motif for assembling bifunctional degraders that recruit an E3 ligase and a target protein. Its propargyl alcohol functionality enables versatile conjugation strategies, supporting modular synthesis and late-stage functionalization in targeted protein degradation workflows. The structural features and reactivity profile are described in detail below, including practical considerations for PROTAC construction.
Structure: The linker is a polyether chain terminating in a primary propargylic alcohol, featuring repeating ether linkages that confer flexibility and polarity. It contains a terminal alkyne suitable for click-type transformations, and an alcohol that can participate in derivatization while maintaining a stable carbon framework.
Reactivity: The terminal alkyne supports copper-catalyzed azide–alkyne cycloaddition with azide-bearing partners under standard “click” conditions, enabling efficient conjugation to complementary PROTAC fragments. The primary alcohol can be activated for substitution or ester formation when preparing coupling handles. Typical approaches use inert atmospheres where appropriate, polar aprotic solvents for solubility, and copper sources with stabilizing ligands for controlled cycloaddition performance.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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