(E)-Cyclooct-4-en-1-yl (2,5-dioxopyrrolidin-1-yl) carbonate

 CAS No.: 1191901-33-3  Cat No.: BP-501686  Purity: 95% rel-(1R-4E-pR)-equatorial 4.5  

(E)-Cyclooct-4-en-1-yl (2,5-dioxopyrrolidin-1-yl) carbonate is a carbonate-linked PROTAC linker building block featuring an (E)-cyclooctene-derived alkene segment conjugated through a carbonate to an N-hydroxysuccinimide–type activated carbonyl functionality (2,5-dioxopyrrolidin-1-yl). Structurally, the carbonate linkage provides a stable yet synthetically versatile connection point that can be used to install the linker onto amine-containing ligands or other nucleophiles via carbamate formation, while the cyclooctenyl region contributes conformational flexibility and defined hydrophobic character to tune the spatial presentation of the two binding moieties. In targeted protein degradation workflows, this type of linker is used to optimize the geometry and effective distance between the recruiting ligand and the E3 ligase binder, thereby improving formation of the ternary complex and degradation potency. As a modular intermediate, it supports systematic structure–activity relationship studies and facilitates reproducible synthesis of degraders for mechanistic and optimization experiments.

(E)-Cyclooct-4-en-1-yl (2,5-dioxopyrrolidin-1-yl) carbonate

Structure of 1191901-33-3

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Category
PROTAC Linker
Molecular Formula
C13H17NO5
Molecular Weight
267.28

* For research and manufacturing use only. Not for human or clinical use.

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Popular Publications Citing BOC Sciences Products
Purity
95% rel-(1R-4E-pR)-equatorial
Solubility
Soluble
Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Shipping
Room temperature in continental US; may vary elsewhere.
IUPACName
[(4E)-cyclooct-4-en-1-yl] (2,5-dioxopyrrolidin-1-yl) carbonate
Synonyms
TCO-NHS ester; TCO-NHS; (E)-Cyclooct-4-en-1-yl (2,5-dioxopyrrolidin-1-yl) carbonate
InChI Key
OUGQJOKGFAIFAQ-OWOJBTEDSA-N
InChI
InChI=1S/C13H17NO5/c15-11-8-9-12(16)14(11)19-13(17)18-10-6-4-2-1-3-5-7-10/h1-2,10H,3-9H2/b2-1+
SMILES
C1CC=CCCC(C1)OC(=O)ON2C(=O)CCC2=O
1. Comparison of analytical methods for antibody conjugates with application in nuclear imaging - Report from the trenches
Irene V J Feiner, Beatrice Longo, Vanessa Gómez-Vallejo, Javier Calvo, Marion Chomet, Danielle J Vugts, Albert D Windhorst, Daniel Padro, Matteo Zanda, Luka Rejc, Jordi Llop Nucl Med Biol. 2021 Nov-Dec;102-103:24-33.doi: 10.1016/j.nucmedbio.2021.08.001.Epub 2021 Aug 18.
Introduction:Monoclonal antibodies (mAbs) are widely used in nuclear imaging. Radiolabelling with positron emitting radionuclides, typically radiometals, requires the incorporation of a bifunctional chelator for the formation of the radiometal-mAb complex. Additionally, mAbs can be conjugated with small molecules capable to undergo bioorthogonal click reactions in vivo, enabling pre-targeting strategies. The determination of the number of functionalities attached to the mAb is critically important to ensure a good labelling yield or to guarantee pre-targeting efficacy. In this work, we compare three different analytical methods for the assessment of average functionalisation and heterogeneity of the conjugated mAbs. Methods:Two selected mAbs (Trastuzumab and Bevacizumab) were randomly conjugated through lysine residues with 3-10 equivalents p-isothiocyanatobenzyl-desferrioxamine (p-NCS-Bz-DFO) or 20-200 equivalents trans-cyclooctene-N-hydroxysuccinimide ester (TCO-NHS). The DFO- or TCO-to-mAb ratio were determined using three different methods: direct titration (radiometric for DFO-conjugated mAbs, photometric for TCO-conjugated mAbs), MALDI/TOF MS mass analysis (Matrix-Assisted Laser Desorption-Ionization/Time of Flight Mass Spectrometry), and UPLC/ESI-TOF MS mass analysis (Ultra High Performance Liquid Chromatography/Electrospray Ionization-Time of Flight Mass Spectrometry). Results:Radiometric and photometric titrations provided information on the average number of DFO and TCO functionalities per mAb respectively. MALDI/TOF MS provided equivalent results to those obtained by titration, although investigation of the heterogeneity of the resulting mixture was challenging and inaccurate. UPLC/ESI-TOF MS resulted in good peak resolution in the case of DFO-conjugated mAbs, where an accurate discrimination of the contribution of mono-, di- and tri-substituted mAbs could be achieved by mathematical fitting of the spectra. However, UPLC/ESI-TOF MS was unable to discriminate between different conjugates when the smaller TCO moiety was attached to the mAbs.Conclusions:The three techniques offered comparable results in terms of determining the average number of conjugates per mAb. Additionally, UPLC/ESI-TOF MS was able to shed a light on the heterogeneity of the resulting functionalised mAbs, especially in the case of DFO-conjugated mAbs. Finally, while using a single analytical method might not be a reliable way to determine the average functionalisation and assess the heterogeneity of the sample, a combination of these methods could substantially improve the characterization of mAb conjugates.
2. A Pretargeted Imaging Strategy for Immune Checkpoint Ligand PD-L1 Expression in Tumor Based on Bioorthogonal Diels-Alder Click Chemistry
Lin Qiu, Hui Tan, Qingyu Lin, Zhan Si, Wujian Mao, Tingting Wang, Zhequan Fu, Dengfeng Cheng, Hongcheng Shi Mol Imaging Biol. 2020 Aug;22(4):842-853.doi: 10.1007/s11307-019-01441-3.
Purpose:The use of antibodies as tracers requires labeling with isotopes with long half-lives due to their slow pharmacokinetics, which creates prohibitively high radiation dose to non-target organs. Pretargeted methodology could avoid the high radiation exposure due to the slow pharmacokinetics of antibodies. In this investigation, we reported the development of a novel pretargeted single photon emission computed tomography (SPECT) imaging strategy (atezolizumab-TCO/[99mTc]HYNIC-PEG11-Tz) for evaluating immune checkpoint ligand PD-L1 expression in tumor based on bioorthogonal Diels-Alder click chemistry.Procedures:The radioligand [99mTc]HYNIC-PEG11-Tz was achieved by the synthesis of a 6-hydrazinonicotinc acid (HYNIC) modified 1,2,4,5-tetrazine (Tz) and subsequently radiolabeled with technetium-99m (Tc-99m). The stability of [99mTc]HYNIC-PEG11-Tz was evaluated in vitro, and its blood pharmacokinetic test was performed in vivo. Atezolizumab was modified with trans-cyclooctene (TCO). The [99mTc]HYNIC-PEG11-Tz and atezolizumab-TCO interaction was tested in vitro. Pretargeted H1975 cell immunoreactivity binding and saturation binding assays were evaluated. Pretargeted biodistribution and SPECT imaging experiments were performed in H1975 and A549 tumor-bearing modal mice to evaluate the PD-L1 expression level. Results:[99mTc]HYNIC-PEG11-Tz was successfully radiosynthesized with a specific activity of 9.25 MBq/μg and a radiochemical purity above 95 % as confirmed by reversed-phase HPLC (RP-HPLC). [99mTc]HYNIC-PEG11-Tz showed favorable stability in NS, PBS, and FBS and rapid blood clearance in mice. The atezolizumab was modified with TCO-NHS ester to produce a conjugate with an average 6.4 TCO moieties as confirmed by liquid chromatograph-mass spectrometer (LC-MS). Size exclusion HPLC revealed almost complete reaction between atezolizumab-TCO and [99mTc]HYNIC-PEG11-Tz in vitro, with the 1:1 Tz-to-mAb reaction providing a conversion yield of 88.65 ± 1.22 %. Pretargeted cell immunoreactivity binding and saturation binding assays showed high affinity to H1975 cells. After allowing 48 h for accumulation of atezolizumab-TCO in H1975 tumor, pretargeted in vivo biodistribution revealed high uptake of the radiotracer in the tumor with a tumor-to-muscle ratio of 27.51 and tumor-to-blood ratio of 1.91. Pretargeted SPECT imaging delineated the H1975 tumor clearly. Pretargeted biodistribution and SPECT imaging in control groups demonstrated a significantly reduced tracer accumulation in the A549 tumor.Conclusions:We have developed a HYNIC-modified Tz derivative, and the HYNIC-PEG11-Tz was labeled with Tc-99m with a high specific activity and radiochemical purity. [99mTc]HYNIC-PEG11-Tz reacted rapidly and almost completely towards atezolizumab-TCO in vitro with the 1:1 Tz-to-mAb reaction. SPECT imaging using the pretargeted strategy (atezolizumab-TCO/[99mTc]HYNIC-PEG11-Tz) demonstrated high-contrast images for high PD-L1 expression H1975 tumor and a low background accumulation of the probe. The pretargeted imaging strategy is a powerful tool for evaluating PD-L1 expression in xenograft mice tumor models and a potential candidate for translational clinical application.

This PROTAC linker, (E)-Cyclooct-4-en-1-yl (2,5-dioxopyrrolidin-1-yl) carbonate, is designed to provide a stable, modular connection point for assembling bifunctional degraders. Its carbonate functionality supports efficient conjugation to ligand-bearing handles, enabling controlled formation of linker–ligand architectures commonly used in targeted protein degradation workflows. The subsequent points describe the structural features and practical assembly considerations in detail below.

Structure: The molecule contains a carbonate linkage connecting a cyclooctenyl fragment to a N-substituted succinimide-derived group. It features a cyclic alkene, an ester-type carbonate core, and lactam carbonyls, providing a rigid, chemically defined scaffold with polar carbonyl functionalities that support selective coupling chemistry.

Reactivity: Carbonate-based linkers are typically employed in PROTAC synthesis via nucleophilic substitution or carbamate/ester-forming steps, where an alcohol or amine nucleophile displaces the appropriate leaving group under standard organic synthesis conditions. Coupling is commonly facilitated by base activation, with polar aprotic solvents and inert atmosphere used to minimize side reactions. Mechanistically, formation proceeds through nucleophile addition to the activated carbonyl center, followed by leaving-group departure to yield the stable conjugate.

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