(E)-Cyclooct-4-en-1-yl (2,5-dioxopyrrolidin-1-yl) carbonate
(E)-Cyclooct-4-en-1-yl (2,5-dioxopyrrolidin-1-yl) carbonate is a carbonate-linked PROTAC linker building block featuring an (E)-cyclooctene-derived alkene segment conjugated through a carbonate to an N-hydroxysuccinimide–type activated carbonyl functionality (2,5-dioxopyrrolidin-1-yl). Structurally, the carbonate linkage provides a stable yet synthetically versatile connection point that can be used to install the linker onto amine-containing ligands or other nucleophiles via carbamate formation, while the cyclooctenyl region contributes conformational flexibility and defined hydrophobic character to tune the spatial presentation of the two binding moieties. In targeted protein degradation workflows, this type of linker is used to optimize the geometry and effective distance between the recruiting ligand and the E3 ligase binder, thereby improving formation of the ternary complex and degradation potency. As a modular intermediate, it supports systematic structure–activity relationship studies and facilitates reproducible synthesis of degraders for mechanistic and optimization experiments.
Structure of 1191901-33-3
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This PROTAC linker, (E)-Cyclooct-4-en-1-yl (2,5-dioxopyrrolidin-1-yl) carbonate, is designed to provide a stable, modular connection point for assembling bifunctional degraders. Its carbonate functionality supports efficient conjugation to ligand-bearing handles, enabling controlled formation of linker–ligand architectures commonly used in targeted protein degradation workflows. The subsequent points describe the structural features and practical assembly considerations in detail below.
Structure: The molecule contains a carbonate linkage connecting a cyclooctenyl fragment to a N-substituted succinimide-derived group. It features a cyclic alkene, an ester-type carbonate core, and lactam carbonyls, providing a rigid, chemically defined scaffold with polar carbonyl functionalities that support selective coupling chemistry.
Reactivity: Carbonate-based linkers are typically employed in PROTAC synthesis via nucleophilic substitution or carbamate/ester-forming steps, where an alcohol or amine nucleophile displaces the appropriate leaving group under standard organic synthesis conditions. Coupling is commonly facilitated by base activation, with polar aprotic solvents and inert atmosphere used to minimize side reactions. Mechanistically, formation proceeds through nucleophile addition to the activated carbonyl center, followed by leaving-group departure to yield the stable conjugate.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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