(2-Pyridyldithio)-PEG2-Boc
(2-Pyridyldithio)-PEG2-Boc is a bifunctional PEG-based linker designed for PROTAC and targeted protein degradation workflows where controlled conjugation and flexible spacing are required. Structurally, it combines a short poly(ethylene glycol) segment with a tert-butyl ester-protected carboxylic acid and a 2-pyridyldisulfide (pyridyl disulfide) moiety, providing a thiol-reactive disulfide exchange site. In PROTAC assemblies, the pyridyl disulfide group can be used to form reversible disulfide bonds with cysteine-containing ligands or thiol-functionalized components, enabling modular construction of heterobifunctional degraders while maintaining aqueous compatibility and reducing steric strain. The pyridyl disulfide can undergo thiol-disulfide exchange, while the tert-butyl ester can be removed to reveal a carboxylic acid; the PEG2 spacer helps tune effective geometry between the target-binding and E3-ligase–recruiting elements. This linker is therefore valuable for researchers seeking robust, experimentally tractable conjugation strategies to generate degraders with tunable linker length and exchangeable connectivity for downstream optimization.
Structure of 2144777-73-9
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This PROTAC linker, (2-Pyridyldithio)-PEG2-Boc, is designed to enable controlled assembly of targeted degradation constructs through a thiol-reactive pyridyl disulfide motif coupled to a short polyethylene glycol spacer and a protected carboxyl functionality. Its disulfide handle supports efficient conjugation to thiol-bearing ligands, while the PEG segment can improve solubility and presentation of the binding modules. The subsequent sections describe its structural features and practical reactivity considerations for PROTAC synthesis.
Structure: The linker contains a pyridyl disulfide unit that can undergo thiol–disulfide exchange, a PEG-based flexible spacer, and a tert-butyl ester that protects a carboxylic acid. It features disulfide and ether linkages, providing a balance of reactivity and conformational flexibility for linker-mediated conjugation.
Reactivity: For PROTAC construction, the pyridyl disulfide moiety is typically used in thiol–disulfide exchange reactions with cysteine- or thiol-functionalized ligands under mild, nucleophilic conditions. Reactions are commonly performed in aqueous buffer or mixed aqueous/organic solvents with careful pH control to favor thiolate formation, while avoiding strongly reducing environments that would prematurely cleave disulfides. No special catalyst is generally required; the key driving force is nucleophilic attack on the activated disulfide.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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