4,7,10,13,16,19,22,25,28,31-Decaoxatetratriaconta-1,33-diyne
4,7,10,13,16,19,22,25,28,31-Decaoxatetratriaconta-1,33-diyne is a poly(ethylene glycol)–type, ether-rich linker characterized by multiple oxygen atoms distributed along a long, flexible scaffold and terminated by two alkyne functionalities. The ether sequence provides conformational mobility and aqueous compatibility, while the terminal alkynes enable orthogonal chemical handles for coupling to PROTAC “warhead” ligands and E3 ligase–binding moieties through widely used click or alkyne-reactive conjugation strategies. In PROTAC design, such a linker architecture can tune the effective distance and relative orientation between the recruited target-binding ligand and the E3 ligase ligand, thereby influencing ternary complex formation and degradation potency. This compound is therefore valuable for researchers seeking to systematically vary linker length, polarity, and conjugation chemistry when optimizing targeted protein degradation constructs, including iterative structure–activity studies and mechanistic comparisons across linker analogs.
Structure of 1351373-47-1
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* For research and manufacturing use only. Not for human or clinical use.
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This PROTAC linker, 4,7,10,13,16,19,22,25,28,31-Decaoxatetratriaconta-1,33-diyne, is designed to provide an extended, flexible yet chemically robust connection between a target-binding ligand and an E3-recruiting moiety. Its ether-rich scaffold supports favorable solvation and conformational adaptability, while the terminal alkyne functionality enables modular conjugation strategies widely used in targeted protein degradation workflows. The detailed structural and synthetic considerations are provided below.
Structure: The linker contains a long polyether framework composed of repeating ether linkages, terminated by two alkyne units. Its structure features carbon–carbon triple bonds and ether oxygen atoms that contribute to polarity, hydrogen-bond acceptor capacity, and conformational flexibility. These traits support efficient spatial presentation of PROTAC partners.
Reactivity: The terminal alkynes enable standard alkyne-based coupling chemistries used to assemble PROTACs, including click-type conjugations and alkyne–functional group coupling under conditions that preserve sensitive ligands. Typical approaches employ copper(I) catalysts for azide–alkyne cycloaddition, or catalyst/solvent systems selected for compatibility with the warhead and E3 ligand. Solvents and temperatures are chosen to maintain linker integrity and minimize side reactions such as alkyne degradation or undesired cross-coupling.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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