4,7,10,13,16,19,22,25-Octaoxaoctacosa-1,27-diyne

 CAS No.: 1351373-46-0  Cat No.: BP-500145  Purity: ≥95% 4.5  

4,7,10,13,16,19,22,25-Octaoxaoctacosa-1,27-diyne is a polyethylene glycol–like, highly oxygenated linker architecture featuring terminal alkyne functionalities at both ends and multiple ether oxygen atoms along the chain. The extended, flexible polyether segment provides conformational mobility and improved solubility, while the diyne termini enable orthogonal coupling strategies commonly used in PROTAC assembly, such as alkyne-compatible click or cross-coupling approaches that connect a ligand for the E3 ligase to a ligand for the target protein. In targeted protein degradation designs, this type of linker can tune the effective distance and relative orientation between the two binding moieties, thereby influencing ternary complex formation and degradation potency. As a modular, chemically addressable linker, it is valuable for systematic linker optimization, allowing researchers to explore how chain length, ether-rich flexibility, and terminal unsaturation affect cooperative binding and degradation efficiency.

4,7,10,13,16,19,22,25-Octaoxaoctacosa-1,27-diyne

Structure of 1351373-46-0

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Category
PROTAC Linker
Molecular Formula
C20H34O8
Molecular Weight
402.48
Appearance
Pale Yellow or Colorless Oily Matter

* For research and manufacturing use only. Not for human or clinical use.

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Purity
≥95%
Solubility
Soluble in DMSO
Appearance
Pale Yellow or Colorless Oily Matter
Storage
Store at 2-8°C for short term (days to weeks) or -20°C for long term (months to years)
Shipping
Room temperature in continental US; may vary elsewhere.
IUPACName
3-[2-[2-[2-[2-[2-[2-(2-prop-2-ynoxyethoxy)ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]prop-1-yne
Synonyms
Bis-propargyl-PEG8; Bis-propargyl-PEG7
Boiling Point
459.7±40.0°C at 760 mmHg
Density
1.1±0.1 g/cm3
InChI Key
VVUXHSSWSXTRPE-UHFFFAOYSA-N
InChI
InChI=1S/C20H34O8/c1-3-5-21-7-9-23-11-13-25-15-17-27-19-20-28-18-16-26-14-12-24-10-8-22-6-4-2/h1-2H,5-20H2
SMILES
C#CCOCCOCCOCCOCCOCCOCCOCCOCC#C
1. The metabolism of 7,10,13,16,19-docosapentaenoic acid to 4,7,10,13,16,19-docosahexaenoic acid in rat liver is independent of a 4-desaturase
A Voss, M Reinhart, S Sankarappa, H Sprecher J Biol Chem. 1991 Oct 25;266(30):19995-20000.
The hypothesis that the last step in the biosynthesis of 4,7,10,13,16,19-22:6 from linolenate is catalyzed by an acyl-CoA-dependent 4-desaturase has never been evaluated by direct experimentation. When rat liver microsomes were incubated with [1-14C]7,10,13,16,19-22:5, under conditions where linoleate was readily desaturated to 6,9,12-18:3, it was never possible to detect the product of the putative 4-desaturase. In the presence of malonyl-CoA, 7,10,13,16,19-22:5 was sequentially chain-elongated to 9,12,15,18,21-24:5, followed by its desaturation at position 6 to give 6,9,12,15,18,21-24:6. Microsomes desaturated 9,12,15,18,21-24:5 at rates similar to those observed for metabolizing linoleate to 6,9,12-18:3. Rat hepatocytes metabolize [1-14C]7,10,13,16,19-22:5 to 22:6(n-3), but in addition, it was possible to detect small amounts of esterified 24:5(n-3) and 24:6(n-3) in phospholipids, which is a finding consistent with their role as obligatory intermediates in 22:6(n-3) biosynthesis. When 3-14C-labeled 24:5(n-3) or 24:6(n-3) were incubated with hepatocytes, only a small amount of either substrate was esterified. [3-14C] 24:5(n-3) was metabolized both by beta-oxidation to 22:5(n-3) and by serving as a precursor for the biosynthesis of 24:6(n-3) and 22:6(n-3). The primary metabolic fate of [3-14C]24:6(n-3) was beta-oxidation to 22:6(n-3), followed by its acylation into membrane lipids. Our results thus document that 22:5(n-3) is the precursor for 22:6(n-3) but via a pathway that is independent of a 4-desaturase. This pathway involves the microsomal chain elongation of 22:5(n-3) to 24:5(n-3), followed by its desaturation to 24:6(n-3). This microsomal product is then metabolized, via beta-oxidation, to 22:6(n-3).
2. Regulation of the biosynthesis of 4,7,10,13,16,19-docosahexaenoic acid
D L Luthria, B S Mohammed, H Sprecher J Biol Chem. 1996 Jul 5;271(27):16020-5.doi: 10.1074/jbc.271.27.16020.
The synthesis of 4,7,10,13,16,19-docosahexaenoic acid (22:6(n-3)) requires that when 6,9,12,15,18,21-tetracosahexaenoic acid (24:6(n-3)) is produced in the endoplasmic reticulum, it preferentially moves to peroxisomes for one cycle of beta-oxidation rather than serving as a substrate for membrane lipid synthesis. Both 24:6(n-3) and its precursor, 9,12,15,18,21-tetracosapentaenoic acid (24:5(n-3)), were poor substrates for acylation into 1-acyl-sn-glycero-3-phosphocholine (1-acyl-GPC) by rat liver microsomes. When peroxisomes were incubated with 1-14C- or 3-14C-labeled 7,10,13,16,19-docosapentaenoic acid (22:5(n-3)), [1-14C]22:6(n-3), [3-14C]24:5(n-3), or [3-14C]24:6(n-3), only small amounts of acid-soluble radioactivity were produced when double bond removal at positions 4 and 5 was required. When microsomes and 1-acyl-GPC were included in incubations, the preferred metabolic fate of acids, with their first double bond at either positions 4 or 5, was to move out of peroxisomes for esterification into the acceptor rather than serving as substrates for continued beta-oxidation. When [1-14C]22:6(n-3) or [3-14C]24:6(n-3) was incubated with peroxisomes, 2-trans-4,7,10,13,16,19-22:7 accumulated. The first cycle of 20:5(n-3) beta-oxidation proceeds through 2-trans-4,8,11,14,17-20:6 and thus requires both Delta3,5,Delta2, 4-dienoyl-CoA isomerase and 2,4-dienoyl-CoA reductase. The accumulation of the substrate for 2,4-dienoyl-CoA reductase, as generated from 22:6(n-3), but not from 20:5(n-3), suggests that this enzyme distinguishes between subtle structural differences. When 22:6(n-3) is produced from 24:6(n-3), its continued degradation is impaired because of low 2,4-dienoyl-CoA reductase activity. This slow reaction rate likely contributes to the transport of 22:6(n-3) out of peroxisomes for rapid acylation into 1-acyl-GPC by microsomes.
3. Dipotassium and sodium/potassium crystalline picrate complexes with the crown ether 6,7,9,10,12,13,20,21,23,24,26,27-dodecahydrodibenzo[b,n]-[1,4, 7,10,13,16,19,22]octaoxacyclotetracosin (dibenzo-24-crown-8)
T Gallagher, M J Taylor, S R Ernst, M L Hackert, N S Poonia Acta Crystallogr B. 1991 Jun 1;47 ( Pt 3):362-8.doi: 10.1107/s0108768190013544.
The crystal structures of the dipotassium and the mixed sodium/potassium picrate complexes with the crown ether dibenzo-24-crown-8 (DB24C8) were solved and found to be nearly identical. (I): NaK-pic2(DB24C8), [NaK(C6H2N3O7)2(C24H32O8)]. Mr = 966.8, triclinic, P1, a = 8.164 (2), b = 9.960 (2), c = 13.368 (3) A, alpha = 103.92 (3), beta = 108.03 (2), gamma = 93.23 (2) degrees, V = 993.0 (7) A3, Z = 1, Dm = 1.54 (T = 298 K). Dx = 1.62 (1) g cm-3, lambda = (Mo K alpha) 0.71069 A, mu = 2.37 cm-1, F(000) = 500, T = 103 K, R = 0.086 for 2904 unique reflections. (II): K2pic2(DB24C8), [K2(C6H2N3O7)2(C24H32O8)]. Mr = 982.9, triclinic, P1, a = 8.231 (4), b = 9.850 (2), c = 13.346 (4) A, alpha = 103.91 (2), beta = 106.82 (3), gamma = 93.37 (2) degrees, V = 995.7 (9) A3, Z = 1, Dm = 1.59 (T = 298 K), Dx = 1.638 (8) g cm-3, lambda (Mo K alpha) = 0.71069 A, mu = 3.30 cm-1, F(000) = 508, T = 163 K, R = 0.042 for 4835 unique reflections. Both structures feature eight-coordinated cations between alternating layers of relatively flat crown ligands and paired picrates. In the mixed-metal system the two cations are disordered between two P1-related sites; these metal sites have a coordination environment only slightly different from that in the dipotassium structure. Na+ is able to occupy an environment similar to that of K+ under the conditions of these crystals, a situation not previously observed in the chemistry of crown ethers or macrocylic multidentates.
ConcentrationVolumeMass1 mg5 mg10 mg
1 mM2.4846 mL12.4230 mL24.8460 mL
5 mM0.4969 mL2.4846 mL4.9692 mL
10 mM0.2485 mL1.2423 mL2.4846 mL

4,7,10,13,16,19,22,25-Octaoxaoctacosa-1,27-diyne, is designed to serve as a rigid, chemically robust spacer that can tune the spatial relationship between a target-binding ligand and an E3 ligase recruiter. Its alternating oxygen-rich segments and terminal alkyne functionality support controlled attachment chemistry and favorable conformational behavior in targeted protein degradation constructs. Detailed structural and reactivity considerations are provided below to guide experimental PROTAC synthesis and optimization.

Structure: The linker is an extended polyether framework incorporating multiple ether oxygen atoms and two terminal alkyne groups. Its conjugation-free, oxygen-rich backbone provides polarity and conformational modulation, while the carbon–carbon triple bonds offer defined attachment handles. Overall, it is expected to be chemically stable under typical organic synthesis conditions.

Reactivity: The terminal alkynes enable widely used PROTAC linker coupling strategies such as alkyne–azide cycloaddition (CuAAC) or related click-type conjugations, as well as alkyne functionalization via nucleophilic addition or electrophile-mediated derivatization when appropriate. Typical conditions employ anhydrous organic solvents, inert atmosphere when needed, and copper catalysts for CuAAC, with base additives to promote efficient cycloaddition. Reaction choice should match the complementary functional groups on the ligands and the desired linker–ligand geometry.

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It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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