4,7,10,13,16,19,22,25-Octaoxaoctacosa-1,27-diyne is a polyethylene glycol–like, highly oxygenated linker architecture featuring terminal alkyne functionalities at both ends and multiple ether oxygen atoms along the chain. The extended, flexible polyether segment provides conformational mobility and improved solubility, while the diyne termini enable orthogonal coupling strategies commonly used in PROTAC assembly, such as alkyne-compatible click or cross-coupling approaches that connect a ligand for the E3 ligase to a ligand for the target protein. In targeted protein degradation designs, this type of linker can tune the effective distance and relative orientation between the two binding moieties, thereby influencing ternary complex formation and degradation potency. As a modular, chemically addressable linker, it is valuable for systematic linker optimization, allowing researchers to explore how chain length, ether-rich flexibility, and terminal unsaturation affect cooperative binding and degradation efficiency.
Structure of 1351373-46-0
* For research and manufacturing use only. Not for human or clinical use.
| Size | Price | Stock | Quantity |
|---|---|---|---|
| -- | $-- | In stock |
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| ConcentrationVolumeMass | 1 mg | 5 mg | 10 mg |
|---|---|---|---|
| 1 mM | 2.4846 mL | 12.4230 mL | 24.8460 mL |
| 5 mM | 0.4969 mL | 2.4846 mL | 4.9692 mL |
| 10 mM | 0.2485 mL | 1.2423 mL | 2.4846 mL |
4,7,10,13,16,19,22,25-Octaoxaoctacosa-1,27-diyne, is designed to serve as a rigid, chemically robust spacer that can tune the spatial relationship between a target-binding ligand and an E3 ligase recruiter. Its alternating oxygen-rich segments and terminal alkyne functionality support controlled attachment chemistry and favorable conformational behavior in targeted protein degradation constructs. Detailed structural and reactivity considerations are provided below to guide experimental PROTAC synthesis and optimization.
Structure: The linker is an extended polyether framework incorporating multiple ether oxygen atoms and two terminal alkyne groups. Its conjugation-free, oxygen-rich backbone provides polarity and conformational modulation, while the carbon–carbon triple bonds offer defined attachment handles. Overall, it is expected to be chemically stable under typical organic synthesis conditions.
Reactivity: The terminal alkynes enable widely used PROTAC linker coupling strategies such as alkyne–azide cycloaddition (CuAAC) or related click-type conjugations, as well as alkyne functionalization via nucleophilic addition or electrophile-mediated derivatization when appropriate. Typical conditions employ anhydrous organic solvents, inert atmosphere when needed, and copper catalysts for CuAAC, with base additives to promote efficient cycloaddition. Reaction choice should match the complementary functional groups on the ligands and the desired linker–ligand geometry.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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