4,7,10,13,16,19,22-Heptaoxapentacosa-1,24-diyne is a polyether-based, linear linker featuring multiple ether oxygen atoms separated by alkyne termini, providing a rigid yet conformationally adaptable scaffold for PROTAC construction. The repeating oxygenated segments can support favorable solvation and spacing, while the terminal diyne functionality enables controlled attachment to two PROTAC “warhead” components through linker–payload and linker–E3 ligase conjugation strategies that preserve the relative orientation required for productive ternary-complex formation. In targeted protein degradation designs, such linkers are used to tune the effective reach and geometrical alignment between the ligand that recruits the E3 ligase and the ligand that binds the target protein, thereby influencing ubiquitination efficiency and degradation potency. This compound is valuable for researchers seeking to systematically vary linker length, polarity, and rigidity in structure–activity relationship studies, using well-established linker-chemistry approaches to generate degraders with improved binding cooperativity and reduced off-target interactions.
Structure of 400775-35-1
* For research and manufacturing use only. Not for human or clinical use.
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4,7,10,13,16,19,22-Heptaoxapentacosa-1,24-diyne, provides a rigid, extended carbon–oxygen scaffold that can support controlled spatial presentation of two binding modules. Its conjugated alkyne motif and ether-rich backbone are advantageous for tuning linker length, conformational bias, and overall physicochemical behavior in targeted protein degradation constructs. The subsequent points describe its structural features and practical considerations for PROTAC assembly.
Structure: The linker comprises a long polyether framework featuring multiple ether linkages and terminal alkyne functionality. Its conjugated diyne segment introduces linear, rigid geometry, while the oxygen-rich chain increases polarity and hydrogen-bonding capacity. Overall, it presents a flexible-to-rigid hybrid scaffold with stable carbon–carbon and carbon–oxygen bonds.
Reactivity: Suitable PROTAC construction commonly relies on coupling strategies that preserve alkyne integrity, such as alkyne-compatible functionalization or orthogonal click-type conjugations using appropriately functionalized partners. In practice, reactions are typically performed under conditions that minimize alkyne oxidation and ether cleavage, using inert atmospheres when necessary. Base- or nucleophile-mediated steps should be chosen to avoid side reactions on polyether chains, and catalysts should be selected for chemoselectivity toward the targeted coupling handle.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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