Amino-PEG2-(CH2)3COOH
Amino-PEG2-(CH2)3COOH is a heterobifunctional PEG-based linker featuring an amine terminus for covalent attachment to a targeting ligand or reactive handle, and a terminal carboxylic acid for coupling to the complementary PROTAC component. Structurally, it comprises a short ethylene glycol segment (PEG2) that provides aqueous solubility and conformational flexibility, connected through a three-methylene spacer bearing a terminal acid, enabling controlled spacing between conjugated moieties. In PROTAC design, such linkers help tune the effective distance and relative orientation between the ligand that recruits the E3 ligase and the ligand that engages the target protein, thereby influencing ternary complex formation and degradation potency. The PEG segment can also reduce nonspecific hydrophobic interactions and improve handling in biological assays. This linker is therefore valuable for constructing and optimizing targeted protein degradation molecules where precise, flexible, and water-compatible conjugation is required.
Structure of 1263046-77-0
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* For research and manufacturing use only. Not for human or clinical use.
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This amino-terminated PEG-based linker is designed to support efficient conjugation in targeted protein degradation (PROTAC) workflows. Its flexible, hydrophilic poly(ethylene glycol) segment can help tune solubility and spatial presentation between the ligand and the recruited E3 ligase binder, improving the practical assembly of degraders. The following sections describe the linker’s structural features and the typical chemistry used to incorporate it into PROTAC constructs in a research setting.
Structure: The linker contains an amino functionality at one terminus and a carboxylic acid at the other, separated by a short, flexible alkyl segment and an ethylene glycol repeat unit. It features ether linkages that confer hydrophilicity and conformational flexibility, with amine and carboxyl groups suitable for standard bioconjugation chemistries.
Reactivity: The amino and carboxyl termini enable robust coupling routes commonly used in PROTAC synthesis, including amide bond formation and related carbodiimide-mediated condensations. Typical strategies involve activating the carboxylic acid (for example, with carbodiimides and an auxiliary coupling reagent) to react with the amine-bearing partner under mild aqueous or mixed solvent conditions, often with base to promote nucleophilic acyl substitution.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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