Amino-PEG4-benzyl ester

 CAS No.: 1351397-21-1  Cat No.: BP-501464 4.5  

Amino-PEG4-benzyl ester is a bifunctional polyethylene glycol (PEG) linker bearing a terminal amino group and a benzyl ester at the opposite end. Structurally, it provides a short, flexible PEG chain that enhances solubility and spatial separation while simultaneously offering orthogonal chemical handles for conjugation. In PROTAC and targeted protein degradation workflows, this linker is used to connect a ligand-derived warhead or E3-recruiting moiety to another functional component, helping to position the two binding partners within a productive geometry for ternary complex formation. The benzyl ester can serve as a protected carboxyl equivalent for subsequent activation or coupling steps, whereas the amino terminus enables amide or other nucleophile-driven bond formation under standard bioconjugation conditions. Its utility lies in enabling modular synthesis of degraders with tunable linker length and flexibility, which is critical for optimizing degradation potency and selectivity in experimental screening.

Amino-PEG4-benzyl ester

Structure of 1351397-21-1

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PROTAC Linker
Molecular Formula
C₁₈H₂₉NO₆
Molecular Weight
355.43

* For research and manufacturing use only. Not for human or clinical use.

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IUPACName
benzyl 3-[2-[2-[2-(2-aminoethoxy)ethoxy]ethoxy]ethoxy]propanoate
InChI Key
MNJPPZOECOMFQW-UHFFFAOYSA-N
InChI
InChI=1S/C18H29NO6/c19-7-9-22-11-13-24-15-14-23-12-10-21-8-6-18(20)25-16-17-4-2-1-3-5-17/h1-5H,6-16,19H2
SMILES
C1=CC=C(C=C1)COC(=O)CCOCCOCCOCCOCCN
1. Tailoring Hyperbranched Poly(β-amino ester) as a Robust and Universal Platform for Cytosolic Protein Delivery
Xun Liu, Ziyin Zhao, Fan Wu, Yongbing Chen, Lichen Yin Adv Mater. 2022 Feb;34(8):e2108116.doi: 10.1002/adma.202108116.Epub 2022 Jan 17.
Cytosolic protein delivery is a prerequisite for protein-based biotechnologies and therapeutics on intracellular targets. Polymers that can complex with proteins to form nano-assemblies represent one of the most important categories of materials, because of the ease of nano-fabrication, high protein loading efficiency, no need for purification, and maintenance of protein bioactivity. Stable protein encapsulation and efficient intracellular liberation are two critical yet opposite processes toward cytosolic delivery, and polymers that can resolve these two conflicting challenges are still lacking. Herein, hyperbranched poly(β-amino ester) (HPAE) with backbone-embedded phenylboronic acid (PBA) is developed to synchronize these two processes, wherein PBA enhanced protein encapsulation via nitrogen-boronate (N-B) coordination while triggered polymer degradation and protein release upon oxidation by H2 O2 in cancer cells. Upon optimization of the branching degree, charge density, and PBA distribution, the best-performing A2-B3-C2-S2 -P2 is identified, which mediates robust delivery of various native proteins/peptides with distinct molecular weights (1.6-430 kDa) and isoelectric points (4.1-10.3) into cancer cells, including enzymes, toxins, antibodies, and CRISPR-Cas9 ribonucleoproteins (RNPs). Moreover, A2-B3-C2-S2 -P2 mediates effective cytosolic delivery of saporin both in vitro and in vivo to provoke remarkable anti-tumor efficacy. Such a potent and universal platform holds transformative potentials for protein pharmaceuticals.
2. Synthesis of amino ester-embedded benzimidazoles: a one-pot sequential protocol under metal-free neutral conditions
Priyabrata Roy, Chandan Bodhak, Animesh Pramanik Mol Divers. 2017 Feb;21(1):89-100.doi: 10.1007/s11030-016-9701-z.Epub 2016 Sep 27.
A one-pot three-component protocol has been developed for the synthesis of amino ester-embedded benzimidazoles under metal-free neutral conditions. Sequentially, the methodology involves coupling of an amino ester with 1-fluoro-2-nitrobenzene, reduction of the coupled nitroarene by sodium dithionite, and cyclization of the corresponding diamine with an aldehyde.
3. Biocatalysis of aromatic benzyl-propionate ester by different immobilized lipases
Amanda Gomes Almeida Sá, Alessandra Cristina de Meneses, Lindomar Alberto Lerin, Pedro Henrique Hermes de Araújo, Cláudia Sayer, Débora de Oliveira Bioprocess Biosyst Eng. 2018 May;41(5):585-591.doi: 10.1007/s00449-018-1893-4.Epub 2018 Jan 19.
Benzyl propionate is an aromatic ester that possesses a fruity odor and is usually found in nature in the composition of some fruits such as plums and melons. This work aimed for the benzyl propionate synthesis by esterification using a new immobilized enzyme preparation with low-cost material from Candida antarctica (NS 88011) and three commercial immobilized lipases (Novozym 435, Lipozyme TL-IM and Lipozyme RM-IM). Novozym 435 had the best performance even when the solvent tert-butanol was absent of the reaction medium. Results from a 22 factorial design showed that an increase in the enzyme amount led to a higher conversion, even when the temperature was kept at the low value. Currently, no research had synthesized successfully benzyl propionate via esterification mediated by lipases; and we reached an ester conversion of ~ 44% after 24 h indicating that it is a promising route for benzyl propionate biotechnological production.

Amino-PEG4-benzyl ester is a versatile polyethylene glycol (PEG)-based linker designed for constructing PROTACs and related targeted protein degradation conjugates. Its PEG segment supports solubility and favorable linker flexibility, while the benzyl ester provides a chemically addressable handle for controlled coupling strategies. This reagent is commonly selected to balance synthetic practicality with the physicochemical properties needed for efficient ternary complex formation. The following sections describe the structure and reactivity considerations in detail.

Structure: The molecule contains an amino-functional group and a benzyl ester protected carboxylate motif connected through a PEG chain. It features ether linkages within the PEG segment, an ester linkage to the benzyl group, and an amine that enables amide or carbamate formation under standard coupling conditions.

Reactivity: The benzyl ester can be converted or selectively transformed using conditions that enable ester activation or cleavage, followed by subsequent amide/carbamate bond formation with appropriate partners. Typical approaches involve ester hydrolysis or activation, then coupling to nucleophiles using coupling reagents and base in polar organic solvents. The amine functionality can participate in nucleophilic substitution or coupling, facilitating modular PROTAC assembly.

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It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O √ c22h30n40 ╳
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