Amino-PEG4-benzyl ester
Amino-PEG4-benzyl ester is a bifunctional polyethylene glycol (PEG) linker bearing a terminal amino group and a benzyl ester at the opposite end. Structurally, it provides a short, flexible PEG chain that enhances solubility and spatial separation while simultaneously offering orthogonal chemical handles for conjugation. In PROTAC and targeted protein degradation workflows, this linker is used to connect a ligand-derived warhead or E3-recruiting moiety to another functional component, helping to position the two binding partners within a productive geometry for ternary complex formation. The benzyl ester can serve as a protected carboxyl equivalent for subsequent activation or coupling steps, whereas the amino terminus enables amide or other nucleophile-driven bond formation under standard bioconjugation conditions. Its utility lies in enabling modular synthesis of degraders with tunable linker length and flexibility, which is critical for optimizing degradation potency and selectivity in experimental screening.
Structure of 1351397-21-1
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Amino-PEG4-benzyl ester is a versatile polyethylene glycol (PEG)-based linker designed for constructing PROTACs and related targeted protein degradation conjugates. Its PEG segment supports solubility and favorable linker flexibility, while the benzyl ester provides a chemically addressable handle for controlled coupling strategies. This reagent is commonly selected to balance synthetic practicality with the physicochemical properties needed for efficient ternary complex formation. The following sections describe the structure and reactivity considerations in detail.
Structure: The molecule contains an amino-functional group and a benzyl ester protected carboxylate motif connected through a PEG chain. It features ether linkages within the PEG segment, an ester linkage to the benzyl group, and an amine that enables amide or carbamate formation under standard coupling conditions.
Reactivity: The benzyl ester can be converted or selectively transformed using conditions that enable ester activation or cleavage, followed by subsequent amide/carbamate bond formation with appropriate partners. Typical approaches involve ester hydrolysis or activation, then coupling to nucleophiles using coupling reagents and base in polar organic solvents. The amine functionality can participate in nucleophilic substitution or coupling, facilitating modular PROTAC assembly.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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