Auxin is a versatile Molecular Glue that plays a pivotal role in targeted protein degradation research. This compound specifically targets the SCF TIR1 E3 ubiquitin ligase complex, facilitating the recruitment and subsequent ubiquitination of proteins tagged with an auxin-inducible degron (AID). The binding site of Auxin is located at the interface between TIR1 and the AID-tagged substrate, promoting substrate recognition and degradation. Auxin's molecular characteristics include its small size and ability to modulate protein-protein interactions, making it an invaluable tool in the study of protein dynamics and cellular processes. The primary mechanism of Auxin involves the promotion of proximity between the E3 ligase and the protein of interest, effectively marking it for proteasomal degradation. This targeted approach is instrumental in dissecting protein function, investigating cellular signaling pathways, and exploring the therapeutic potential of protein degradation. Auxin's application in experimental research provides a robust platform for elucidating protein roles in various biological contexts, advancing our understanding of molecular and cellular biology.
Structure of 87-51-4
* For research and manufacturing use only. Not for human or clinical use.
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E3 Ligase: Auxin functions as a molecular glue in plants by recruiting the TIR1/AFB family of E3 ligases. This stabilizes interactions with Aux/IAA transcriptional repressors to promote ubiquitination.
Target Protein: Auxin primarily targets Aux/IAA proteins, transcriptional repressors regulating plant growth and development. Binding to TIR1 enables selective ubiquitination of these repressors.
Degradation Mechanism: Auxin mediates proteasomal degradation through the ubiquitin–proteasome system. The TIR1–Aux/IAA ternary complex promotes polyubiquitination, leading to recognition and clearance by the 26S proteasome.
Applications• Molecular Glue in Protein Degradation: Auxin is employed as a molecular glue to facilitate the targeted degradation of proteins by promoting the interaction between specific proteins and the ubiquitin-proteasome system. This application is pivotal in exploring protein function and regulation, providing insights into cellular processes and potential therapeutic targets.
• Targeted Degradation in Plant Biology: In plant research, Auxin serves as a molecular glue to degrade proteins involved in growth and development. By manipulating protein stability, researchers can investigate gene function and signaling pathways, enhancing our understanding of plant physiology and adaptive responses.
• Auxin-Induced Protein Interaction: Utilizing Auxin as a molecular glue enables the study of protein-protein interactions by inducing the proximity of proteins that are otherwise non-interacting. This approach is instrumental in mapping interaction networks and elucidating the dynamic nature of cellular signaling pathways.
• Conditional Protein Degradation: Auxin allows for the conditional degradation of target proteins, enabling researchers to precisely control protein levels in experimental systems. This capability is essential for dissecting complex biological processes and validating the roles of specific proteins in various cellular contexts.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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