Bis-PEG5-acid is a bifunctional polyethylene glycol (PEG) linker bearing two terminal carboxylic acid groups, providing a flexible, hydrophilic chain architecture suitable for constructing PROTACs and other targeted conjugates. Structurally, it consists of two PEG5 segments tethered through a central scaffold, with carboxylates positioned to enable amide coupling or other carboxyl-reactive chemistries to attach two different ligands or to connect a ligand to a secondary functional module. In PROTAC design, such bis-PEG linkers help spatially organize the E3 ligase–binding moiety and the target-binding ligand, improving productive ternary complex formation by increasing conformational freedom and reducing nonspecific hydrophobic interactions. The two reactive termini also facilitate modular synthesis, allowing systematic variation of linker geometry while maintaining aqueous solubility. This makes Bis-PEG5-acid valuable for experimental optimization of targeted protein degradation workflows, including evaluating how linker length and flexibility influence degradation efficiency and selectivity.
Structure of 439114-13-3
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Bis-PEG5-acid, is designed to provide a flexible, hydrophilic polyethylene glycol-based spacer that can be used to connect binding motifs and tune the effective geometry of ternary complex formation. Its carboxylic acid functionality supports robust conjugation strategies, while the PEG character can improve solubility and reduce nonspecific hydrophobic interactions. The detailed structural and synthetic considerations for PROTAC assembly are provided below.
Structure: Bis-PEG5-acid is a PEG-based bis-functional linker featuring ether linkages within a flexible polymeric chain and terminal carboxylic acid groups. The presence of multiple oxygen atoms enables strong hydrogen-bonding and contributes to water compatibility, while the carbon–oxygen framework provides conformational flexibility relevant to linker-mediated distance control.
Reactivity: The carboxylic acid groups are suitable for standard PROTAC conjugation chemistries that form stable amide or ester linkages with complementary nucleophiles. Typical approaches employ activating reagents such as carbodiimides or uronium-type coupling agents, often with bases, under anhydrous or mixed-solvent conditions to minimize hydrolysis. Solvents like DMF, DMSO, or dichloromethane are commonly used, and reaction progress is monitored to ensure efficient coupling while preserving sensitive functional groups.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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