cis MZ 1 is the inactive diastereomer and negative control for the VHL-recruiting BET degrader MZ1. Public sources describe it as a control compound related to MZ1 and used in BRD4-targeted degradation studies. The molecule retains the conceptual BRD4 ligand, linker, and VHL-ligand architecture, but the stereochemical configuration prevents productive degradation-competent ternary-complex formation. In PROTAC design, cis MZ 1 is valuable because it helps distinguish true VHL-mediated BRD4 degradation from effects caused by bromodomain binding, compound handling, or nonspecific cellular stress. Mechanistically, it is not expected to efficiently induce BRD4 ubiquitination or proteasome-dependent depletion under conditions where active MZ1 functions. It is useful as a matched negative control in BET degradation assays, ternary-complex studies, selectivity experiments, and validation of stereochemistry-dependent PROTAC activity.
Structure of 1797406-72-4
* For research and manufacturing use only. Not for human or clinical use.
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Target: cis MZ 1 is an inactive stereochemical control for BRD4-targeted MZ1 studies.
Binding site: Its JQ1-derived moiety binds BRD4 bromodomain acetyl-lysine recognition sites with affinity.
Mechanism of action: cis MZ 1 is the inactive diastereomeric control of the BRD4-targeting PROTAC MZ1. Although it retains the overall bifunctional design containing a BET bromodomain ligand and VHL ligand framework, the cis configuration disrupts productive VHL engagement and prevents efficient ternary-complex formation. Consequently, cis MZ 1 does not drive robust VHL-mediated BRD4 ubiquitination or proteasomal degradation. It is valuable in degradation studies as a matched negative control for separating BRD4 depletion-dependent transcriptional effects from compound exposure, bromodomain binding, linker effects, or nonspecific cellular responses.
Applications• PROTAC-Mediated Targeted Degradation: cis MZ 1 is a pioneering tool in the field of targeted protein degradation, designed to selectively degrade bromodomain-containing proteins. It facilitates the study of protein function by enabling precise modulation of protein levels, offering a robust approach to dissecting cellular pathways and understanding protein roles within biological systems.
• Bromodomain Protein Degradation: This PROTAC molecule specifically targets bromodomains, making it invaluable for researchers investigating the biological significance of these domains in gene regulation. By inducing the degradation of bromodomain proteins, cis MZ 1 aids in elucidating their contribution to chromatin remodeling and transcriptional control.
• Investigating Epigenetic Regulation: Utilizing cis MZ 1 allows scientists to explore the dynamics of epigenetic regulation through targeted degradation of key proteins involved in chromatin interaction. This application is critical for advancing our understanding of epigenetic mechanisms and their implications in various biological processes.
• Advanced Chemical Biology Studies: As a model PROTAC, cis MZ 1 provides a versatile platform for chemical biology research, enabling the development and refinement of new degradation strategies. Its application in experimental settings supports the advancement of targeted protein degradation technologies and their integration into broader research paradigms.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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