Propargyl-PEG2-N-bis(PEG2)

 CAS No.: 2100306-62-3  Cat No.: BP-501157  Purity: 98% 4.5  

Propargyl-PEG2-N-bis(PEG2) is a branched trifunctional polyethylene glycol (PEG) linker featuring one terminal propargyl group for copper-catalyzed azide–alkyne cycloaddition (CuAAC) and two PEG2 arms terminated with hydroxyl groups. Structurally, it behaves as a flexible, hydrophilic spacer whose short PEG chain length and branching can reduce nonspecific interactions while maintaining effective reach between the two conjugation partners in a PROTAC construct. In targeted protein degradation designs, the propargyl handle enables site-selective attachment to an azide-bearing warhead or E3 ligase ligand, while the two terminal hydroxyl groups provide additional sites for activation or derivatization and the PEG2 branching modulates conformational freedom, which can influence ternary complex formation and degradation potency. This linker is therefore valuable for systematically optimizing PROTAC geometry, improving aqueous handling, and enabling modular assembly of degradation molecules for mechanistic and structure–activity studies.

Propargyl-PEG2-N-bis(PEG2)

Structure of 2100306-62-3

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PROTAC Linker
Molecular Formula
C₁₅H₂₉NO₆
Molecular Weight
319.39

* For research and manufacturing use only. Not for human or clinical use.

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Purity
98%
Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
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Room temperature in continental US; may vary elsewhere.
IUPACName
2-[2-[2-(2-hydroxyethoxy)ethyl-[2-(2-prop-2-ynoxyethoxy)ethyl]amino]ethoxy]ethanol
Synonyms
N-(Propargyl-PEG2)-N-bis(PEG1-alcohol)
InChI Key
SYALILPHJRBSKH-UHFFFAOYSA-N
InChI
InChI=1S/C15H29NO6/c1-2-8-19-14-15-22-11-5-16(3-9-20-12-6-17)4-10-21-13-7-18/h1,17-18H,3-15H2
SMILES
C#CCOCCOCCN(CCOCCO)CCOCCO
1. Regulating effect of baicalin on IKK/IKB/NF-kB signaling pathway and apoptosis-related proteins in rats with ulcerative colitis
Jian Shen, Jiazheng Cheng, Shengguo Zhu, Jun Zhao, Qingyan Ye, Yinyin Xu, Huilin Dong, Xianhui Zheng Int Immunopharmacol. 2019 Aug;73:193-200.doi: 10.1016/j.intimp.2019.04.052.Epub 2019 May 16.
Objective:This study was aimed to explore effect of baicalin on IKK/IKB/NF-kB signaling pathway and apoptosis-related proteins in rats with ulcerative colitis (UC). Methods:Histopathological observation and scores of colon tissue were performed in the UC rat model. IKK/IKB/NF-kB signaling pathway and apoptosis-related proteins were measured by Western blotting. Results:Baicalin significantly increased the activity of SOD, CAT and GSH-Px in colon tissue of rats with UC, but significantly decreased the content of MDA, IL-1β, MPO, PEG2 and TNF-α in colon tissue of rats with UC. In the molecular mechanism, baicalin significantly decreased the expression of cleaved-caspase3, cleaved-caspase9, Bcl-2/Bax, cyt-c, NF-kB p-65, p-IKKβ/IKKβ and p-IKBα/IKBα. Baicalin could significantly inhibit p-IKBα/IKBα content change, but had no significant effect on p-IKKβ/IKKβ.Conclusion:Baicalin may have a regulating effect on IKK/IKB/NF-kB signaling pathway and apoptosis-related proteins in UC rats.
2. Pteryxin attenuates LPS-induced inflammatory responses and inhibits NLRP3 inflammasome activation in RAW264.7 cells
Dong Zhen, Tian-Qi Xuan, Boqin Hu, Xue Bai, Dan-Ni Fu, Yu Wang, Yun Wu, Jingfeng Yang, Qianqian Ma J Ethnopharmacol. 2022 Feb 10;284:114753.doi: 10.1016/j.jep.2021.114753.Epub 2021 Oct 15.
Ethnopharmacological relevance:Pteryxin is a natural coumarin compound that is found in "Qianhu", a traditional Chinese medicine, which possesses heat-clearing and detoxifying functions according to the theory of Traditional Chinese Medicine. Despite its medicinal effects, its anti-inflammatory and mechanisms of actions have not been established.Aim of this study:This study aims to evaluate the anti-inflammatory property and reveal the possible anti-inflammatory mechanisms of pteryxin.Material and methods:LPS-induced RAW 264.7 macrophages and LPS-induced zebrafish model were used for the anti-inflammatory activity determination of pteryxin. The level of NO, PEG2, TNF-α and IL-6 were measured by ELISA. The accumulation of NO and ROS was stained and observed by a fluorescence microscopy. The nuclear translocation of NF-κB p65 and formation of NLRP3 inflammasome complex in LPS-induced RAW 264.7 macrophage cells were analyzed by immunofluorescence assay. The expression level of iNOS, IL-6, COX-2, TNF-α, p-p38, p38, ERK, JNK, p-ERK, p-JNK, IKK, IκB-α, p-IKK, p-IκB-α, p65, NLRP3, p-p65, Caspase 1 (p 20), ASC, and GAPDH were determined by Western blotting. Results:Lipopolysaccharide (LPS)-induced prostaglandin E2 (PGE2) and nitric oxide (NO) secretions were found to be downregulated by pteryxin. Moreover, pteryxin significantly suppressed inflammatory factor secretion in LPS-treated RAW 264.7 cells. Mechanistically, pteryxin significantly downregulated NF-κB/MAPK activation. Moreover, pteryxin inhibited caspase-1 and NLRP3 activation and formation of ASC specks in RAW 264.7 cells, implying that pteryxin inhibits inflammasome assembly, which is a signal for NLRP3 inflammasome activation. In conclusion, pteryxin blocks NF-κB/MAPK signaling, and suppresses the initiation and activation of NLRP3 thereby preventing inflammation.Conclusion:Pteryxin is a potential treatment option for inflammatory-related diseases.
3. Solute carrier transporters: the metabolic gatekeepers of immune cells
Wenxin Song, Danyuan Li, Lei Tao, Qi Luo, Ligong Chen Acta Pharm Sin B. 2020 Jan;10(1):61-78.doi: 10.1016/j.apsb.2019.12.006.Epub 2019 Dec 14.
Solute carrier (SLC) transporters meditate many essential physiological functions, including nutrient uptake, ion influx/efflux, and waste disposal. In its protective role against tumors and infections, the mammalian immune system coordinates complex signals to support the proliferation, differentiation, and effector function of individual cell subsets. Recent research in this area has yielded surprising findings on the roles of solute carrier transporters, which were discovered to regulate lymphocyte signaling and control their differentiation, function, and fate by modulating diverse metabolic pathways and balanced levels of different metabolites. In this review, we present current information mainly on glucose transporters, amino-acid transporters, and metal ion transporters, which are critically important for mediating immune cell homeostasis in many different pathological conditions.

Propargyl-PEG2-N-bis(PEG2) is a polyethylene glycol–based PROTAC linker designed to provide aqueous solubility, conformational flexibility, and a chemically addressable handle for modular assembly. Its PEG-rich scaffold helps tune linker length and hydrophilicity while supporting efficient conjugation to ligands used for targeted protein degradation. The structure and reactivity considerations that govern PROTAC synthesis and subsequent coupling strategies are described in detail below.

Structure: This linker features a PEG oligomer core bearing a terminal propargyl functionality and an N-substituted bis(PEG) motif. Ether linkages dominate the backbone, providing hydrophilicity and flexible conformations. The propargyl group contains a carbon–carbon triple bond suitable for bioorthogonal coupling chemistry, while the N-linked PEG substituents enhance solvation.

Reactivity: The propargyl handle is well suited for copper-catalyzed azide–alkyne cycloaddition or related alkyne-driven conjugation approaches to connect PROTAC ligands bearing azide groups. Typical assembly is performed under conditions that maintain PEG stability and preserve ligand integrity, using appropriate copper sources, ligands, and aqueous or mixed solvents. Mechanistically, the alkyne participates in cycloaddition to form a stable triazole linkage, enabling modular PROTAC construction.

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* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O √ c22h30n40 ╳
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