4,7,10,13,16,19,22,25,28-Nonaoxahentriaconta-1,30-diyne
4,7,10,13,16,19,22,25,28-Nonaoxahentriaconta-1,30-diyne is a poly(ethylene glycol)–type, oxygen-rich linker featuring two terminal alkyne functionalities separated by a long, flexible ether chain. The repeating ether units provide conformational flexibility and aqueous compatibility, while the terminal alkynes enable modular conjugation strategies commonly used in PROTAC synthesis, such as orthogonal “click” reactions (e.g., azide–alkyne cycloaddition) or alkyne-based coupling to install the two ends of a bifunctional degrader. In targeted protein degradation design, this linker serves as a spacer that tunes the effective distance and relative orientation between the ligand-binding moieties, helping to promote productive ternary complex formation and improve degradation efficiency. Its long, hydrophilic backbone can also reduce nonspecific hydrophobic interactions, supporting cleaner structure–activity optimization during iterative PROTAC development.
Structure of 1092554-87-4
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* For research and manufacturing use only. Not for human or clinical use.
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This PROTAC linker, 4,7,10,13,16,19,22,25,28-Nonaoxahentriaconta-1,30-diyne, is designed to provide a rigid, extended spacer that can tune the geometry between a target-binding ligand and an E3 ligase recruiter. Its alkyne-rich termini support modular conjugation strategies commonly used in PROTAC assembly, helping researchers optimize linker length, conformational behavior, and overall degradation performance. Detailed structural and reactivity considerations are provided below.
Structure: The linker contains an extended polyether backbone with multiple ether linkages, combined with terminal alkyne functionality. Its unsaturated carbon–carbon bonds at the termini enable defined attachment points, while the ether-rich segment promotes flexibility and favorable solvation. Overall, it behaves as a rigid–flexible hybrid spacer suitable for PROTAC architectures.
Reactivity: The terminal alkyne groups are compatible with widely used click-type conjugation and related coupling approaches, enabling attachment to complementary electrophiles or azide-bearing partners under mild conditions. Typical workflows employ copper(I) catalysts with appropriate ligands for alkyne–azide cycloaddition, or alternative transition-metal-free coupling variants when copper sensitivity is a concern. Solvents such as polar aprotic or mixed aqueous/organic systems are commonly selected to balance solubility and reaction rate, following established PROTAC linker chemistries.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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