4,7,10,13,16,19,22,25,28-Nonaoxahentriaconta-1,30-diyne

 CAS No.: 1092554-87-4  Cat No.: BP-501036  Purity: >95% 4.5  

4,7,10,13,16,19,22,25,28-Nonaoxahentriaconta-1,30-diyne is a poly(ethylene glycol)–type, oxygen-rich linker featuring two terminal alkyne functionalities separated by a long, flexible ether chain. The repeating ether units provide conformational flexibility and aqueous compatibility, while the terminal alkynes enable modular conjugation strategies commonly used in PROTAC synthesis, such as orthogonal “click” reactions (e.g., azide–alkyne cycloaddition) or alkyne-based coupling to install the two ends of a bifunctional degrader. In targeted protein degradation design, this linker serves as a spacer that tunes the effective distance and relative orientation between the ligand-binding moieties, helping to promote productive ternary complex formation and improve degradation efficiency. Its long, hydrophilic backbone can also reduce nonspecific hydrophobic interactions, supporting cleaner structure–activity optimization during iterative PROTAC development.

4,7,10,13,16,19,22,25,28-Nonaoxahentriaconta-1,30-diyne

Structure of 1092554-87-4

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Category
PROTAC Linker
Molecular Formula
C22H38O9
Molecular Weight
446.53
Appearance
Pale Yellow or Colorless Oily Liquid

* For research and manufacturing use only. Not for human or clinical use.

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Popular Publications Citing BOC Sciences Products
Purity
>95%
Solubility
Soluble in DMSO
Appearance
Pale Yellow or Colorless Oily Liquid
Storage
Store at 2-8°C for short term (days to weeks) or -20°C for long term (months to years)
Shipping
Room temperature in continental US; may vary elsewhere.
IUPACName
3-[2-[2-[2-[2-[2-[2-[2-(2-prop-2-ynoxyethoxy)ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]prop-1-yne
Synonyms
Bis-propargyl-PEG9; Bis-Propargyl-PEG8
Boiling Point
495.5±40.0 °C at 760 mmHg
Density
1.072±0.1 g/cm3
InChI Key
MBRUWMSMSQUEOD-UHFFFAOYSA-N
InChI
InChI=1S/C22H38O9/c1-3-5-23-7-9-25-11-13-27-15-17-29-19-21-31-22-20-30-18-16-28-14-12-26-10-8-24-6-4-2/h1-2H,5-22H2
SMILES
C#CCOCCOCCOCCOCCOCCOCCOCCOCCOCC#C
1. Interaction of myo-inositol hexakisphosphate with biogenic and synthetic polyamines
Julia Torres, Claudia Giorgi, Nicolás Veiga, Carlos Kremer, Antonio Bianchi Org Biomol Chem. 2015 Jul 21;13(27):7500-12.doi: 10.1039/c5ob00900f.
Within all the eukaryotic cells myo-inositol phosphates (InsPs) are an important group of biomolecules that are potentially related to signaling functions. The most abundant member of this family in nature is InsP6 (phytate, L(12-) in its fully deprotonated form). The complicated chemical behavior of this molecule demands a great effort to understand its function in the cell medium. In this work we follow our earlier studies on the interaction of InsP6 with metal cations by inclusion of polyamines (both biogenic and synthetic) as potential agents to produce stable adducts. The stability constants of InsP6-amine adducts and the relevant thermodynamic parameters ΔG°, ΔH°, and ΔS° were determined at 37.0 °C and 0.15 M ionic strength by means of potentiometric titrations and isothermal titration calorimetry (ITC). The biogenic amines studied were 1,4-diaminobutane (putrescine, put), 1,5-diaminopentane (cadaverine, cad), N-(3-aminopropyl)-1,4-diaminobutane (spermidine, spd), N,N'-bis(3-aminopropyl)-1,4-diaminobutane (spermine, spm), and 1-(4-aminobutyl)guanidine (agmatine, agm), while the synthetic models of longer polyamines were 1,19-dimethyl-1,4,7,10,13,16,19-heptaazanonadecane (Me2hexaen), 1,22-dimethyl-1,4,7,10,13,16,19,22-octaazadocosane (Me2heptaen), 1,25-dimethyl-1,4,7,10,13,16,19,22,25-nonaazapentacosane (Me2octaen) and N,N'-bis(3-aminopropyl)-1,3-propanediamine (3,3,3-tet). With the aid of molecular modeling, we also studied the structural aspects of molecular recognition in operation. The final result is a balance between many parameters including charge of the species, flexibility of the amines, H-bonds in the adduct, and desolvation processes.
2. Unsaturated selenacrown ethers: synthesis, structure, and formation of silver complexes
Toshio Shimizu, Mari Kawaguchi, Takahiro Tsuchiya, Kazunori Hirabayashi, Nobumasa Kamigata J Org Chem. 2005 Jun 24;70(13):5036-44.doi: 10.1021/jo0502807.
The unsaturated selenacrown ethers, (Z,Z,Z,Z,Z)-1,4,7,10,13-pentaselenacyclopentadeca-2,5,8,11,14-pentaene (15-US-5) (2), (Z,Z,Z,Z,Z,Z)-1,4,7,10,13,16-hexaselenacyclooctadeca-2,5,8,11,14,17-hexaene (18-US-6) (3), (Z,Z,Z,Z,Z,Z,Z)-1,4,7,10,13,16,19-heptaselenacycloheneicosa-2,5,8,11,14,17,20-heptaene (21-US-7) (4), (Z,Z,Z,Z,Z,Z,Z,Z)-1,4,7,10,13,16,19,22-octaselenacyclotetracosa-2,5,8,11,14,17,20,23-octaene (24-US-8) (5), and (Z,Z,Z,Z,Z,Z,Z,Z,Z)-1,4,7,10,13,16,19,22,25-nonaselenacycloheptacosa-2,5,8,11,14,17,20,23,26-nonaene (27-US-9) (6), were obtained together with 1,4-diselenin (1) by reacting sodium selenide with cis-dichloroethene in the presence of a phase-transfer catalyst. The crystal structures of 2-5 were determined by X-ray crystallographic analysis. The UV spectra of the selenacrown ethers showed absorption maximums in the range of 251-262 nm, which were assigned to n-->pi transitions. The cyclic voltammograms indicated that the large unsaturated selenacrown ethers were oxidized more easily than the small ones. The thermal reactions of the unsaturated selenacrown ethers afforded 1,4-diselenin (1) along with polymeric materials, whereas 1 was thermally stable even at 100 degrees C. The reactions of 1 or unsaturated selenacrown ethers 2-5 with silver ion yielded various novel silver complexes, Ag(C(4)H(4)Se(2))(CF(3)COO) (7), Ag(C(4)H(4)Se(2))(2)(CF(3)COO) (8), Ag(15-US-5)(CF(3)COO) (9), Ag(5)(18-US-6)(3)(CF(3)COO)(5) (10), Ag(7)(21-US-7)(CF(3)COO)(5) (11), Ag(24-US-8)(2)(CF(3)COO) (12), Ag(2)(24-US-8)(CF(3)COO)(2) (13), Ag(3)(24-US-8)(2)(CF(3)COO)(3) (14), Ag(15-US-5)NO(3) (15), and Ag(21-US-7)BF(4) (16). The stoichiometry for the complexation with silver trifluoroacetate in solution was examined by (1)H NMR measurement. The titration plots of 2 and 5 under the dilution conditions showed a distinct inflection point at the 1/1 metal/macrocycle ratio, whereas the plots of 1 and 3 showed gradual change.

This PROTAC linker, 4,7,10,13,16,19,22,25,28-Nonaoxahentriaconta-1,30-diyne, is designed to provide a rigid, extended spacer that can tune the geometry between a target-binding ligand and an E3 ligase recruiter. Its alkyne-rich termini support modular conjugation strategies commonly used in PROTAC assembly, helping researchers optimize linker length, conformational behavior, and overall degradation performance. Detailed structural and reactivity considerations are provided below.

Structure: The linker contains an extended polyether backbone with multiple ether linkages, combined with terminal alkyne functionality. Its unsaturated carbon–carbon bonds at the termini enable defined attachment points, while the ether-rich segment promotes flexibility and favorable solvation. Overall, it behaves as a rigid–flexible hybrid spacer suitable for PROTAC architectures.

Reactivity: The terminal alkyne groups are compatible with widely used click-type conjugation and related coupling approaches, enabling attachment to complementary electrophiles or azide-bearing partners under mild conditions. Typical workflows employ copper(I) catalysts with appropriate ligands for alkyne–azide cycloaddition, or alternative transition-metal-free coupling variants when copper sensitivity is a concern. Solvents such as polar aprotic or mixed aqueous/organic systems are commonly selected to balance solubility and reaction rate, following established PROTAC linker chemistries.

Stock concentration: *
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L

* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

* Total Molecular Weight:
g/mol
Tip: Chemical formula is case sensitive. C22H30N4O √ c22h30n40 ╳
g/mol
g

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