Acid-PEG13-NHS ester is a heterobifunctional polyethylene glycol (PEG) linker featuring a terminal carboxylic acid (“acid” handle) and an N-hydroxysuccinimide (NHS) ester for activated amide bond formation. The PEG chain length provides a flexible, hydrophilic spacer that helps reduce steric interference and can improve solubility and effective presentation of the conjugation site in complex PROTAC assemblies. In PROTAC design, the NHS ester reacts with primary amines on targeting ligands or protein-binding moieties to form stable amide linkages, while the remaining acid functionality can be used for subsequent coupling strategies or for controlled attachment to other components. This linker is therefore valuable for constructing well-defined conjugates, enabling systematic optimization of linker length and attachment chemistry to tune ternary complex formation and targeted protein degradation efficiency in experimental workflows.
Structure of 2152679-62-2
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Acid-PEG13-NHS ester is a polyethylene glycol (PEG)-based linker designed for efficient conjugation in PROTAC workflows. Its NHS-ester functionality enables rapid formation of stable amide bonds with primary amines, supporting the modular assembly of bifunctional degraders. The PEG spacer improves solubility and can help tune linker flexibility and effective distances between target-binding and E3-ligase-binding modules. Detailed structural and reaction considerations are provided below.
Structure: The linker combines an activated N-hydroxysuccinimide ester with a PEG chain and a terminal carboxylic acid. It contains an amide-forming NHS ester, ether linkages within the PEG backbone, and a carboxyl group for further derivatization. Overall, it is typically water-compatible and conformationally flexible.
Reactivity: The NHS ester reacts with primary amines to form amide bonds via nucleophilic acyl substitution. Suitable conditions generally use mildly basic aqueous buffers that maintain amine nucleophilicity while limiting hydrolysis of the activated ester. Common solvents include aqueous buffer systems with optional polar cosolvents. No special catalysts are required; careful control of pH and stoichiometry is important to balance coupling efficiency against hydrolysis.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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