Acid-PEG13-NHS ester

 CAS No.: 2152679-62-2  Cat No.: BP-501104  Purity: ≥95% 4.5  

Acid-PEG13-NHS ester is a heterobifunctional polyethylene glycol (PEG) linker featuring a terminal carboxylic acid (“acid” handle) and an N-hydroxysuccinimide (NHS) ester for activated amide bond formation. The PEG chain length provides a flexible, hydrophilic spacer that helps reduce steric interference and can improve solubility and effective presentation of the conjugation site in complex PROTAC assemblies. In PROTAC design, the NHS ester reacts with primary amines on targeting ligands or protein-binding moieties to form stable amide linkages, while the remaining acid functionality can be used for subsequent coupling strategies or for controlled attachment to other components. This linker is therefore valuable for constructing well-defined conjugates, enabling systematic optimization of linker length and attachment chemistry to tune ternary complex formation and targeted protein degradation efficiency in experimental workflows.

Acid-PEG13-NHS ester

Structure of 2152679-62-2

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Category
PROTAC Linker
Molecular Formula
C34H61NO19
Molecular Weight
787.85
Related CAS
1643594-31-3 (polymer)
Appearance
Light Yellow or White Solid

* For research and manufacturing use only. Not for human or clinical use.

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Purity
≥95%
Appearance
Light Yellow or White Solid
Storage
Store at 2-8°C
Shipping
Room temperature in continental US; may vary elsewhere.
IUPACName
3-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[3-(2,5-dioxopyrrolidin-1-yl)oxy-3-oxopropoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]propanoic acid
Synonyms
Acid-C2-PEG13-NHS ester; COOH-PEG13-SPA; COOH-PEG11-NHS; 4,7,10,13,16,19,22,25,28,31,34,37,40-Tridecaoxatritetracontanedioic acid, 1-(2,5-dioxo-1-pyrrolidinyl) ester; 4,7,10,13,16,19,22,25,28,31,34,37,40-Tridecaoxatritetracontan-1-oic acid, 43-[(2,5-dioxo-1-pyrrolidinyl)oxy]-43-oxo-; 43-[(2,5-Dioxo-1-pyrrolidinyl)oxy]-43-oxo-4,7,10,13,16,19,22,25,28,31,34,37,40-tridecaoxatritetracontan-1-oic acid; 1-(2,5-Dioxo-1-pyrrolidinyl) 4,7,10,13,16,19,22,25,28,31,34,37,40-tridecaoxatritetracontanedioate
Boiling Point
785.9±70.0°C (Predicted)
Density
1.23±0.1 g/cm3 (Predicted)
InChI Key
IBSDUGROMOGHLR-UHFFFAOYSA-N
InChI
InChI=1S/C34H61NO19/c36-31-1-2-32(37)35(31)54-34(40)4-6-42-8-10-44-12-14-46-16-18-48-20-22-50-24-26-52-28-30-53-29-27-51-25-23-49-21-19-47-17-15-45-13-11-43-9-7-41-5-3-33(38)39/h1-30H2,(H,38,39)
SMILES
C1CC(=O)N(C1=O)OC(=O)CCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCC(=O)O
1. A Ketone Ester Drink Lowers Human Ghrelin and Appetite
Brianna J Stubbs, Pete J Cox, Rhys D Evans, Malgorzata Cyranka, Kieran Clarke, Heidi de Wet Obesity (Silver Spring). 2018 Feb;26(2):269-273.doi: 10.1002/oby.22051.Epub 2017 Nov 6.
Objective:The ketones d-β-hydroxybutyrate (BHB) and acetoacetate are elevated during prolonged fasting or during a "ketogenic" diet. Although weight loss on a ketogenic diet may be associated with decreased appetite and altered gut hormone levels, it is unknown whether such changes are caused by elevated blood ketones. This study investigated the effects of an exogenous ketone ester (KE) on appetite. Methods:Following an overnight fast, subjects with normal weight (n = 15) consumed 1.9 kcal/kg of KE, or isocaloric dextrose (DEXT), in drinks matched for volume, taste, tonicity, and color. Blood samples were analyzed for BHB, glucose, insulin, ghrelin, glucagon-like peptide 1 (GLP-1), and peptide tyrosine tyrosine (PYY), and a three-measure visual analogue scale was used to measure hunger, fullness, and desire to eat. Results:KE consumption increased blood BHB levels from 0.2 to 3.3 mM after 60 minutes. DEXT consumption increased plasma glucose levels between 30 and 60 minutes. Postprandial plasma insulin, ghrelin, GLP-1, and PYY levels were significantly lower 2 to 4 hours after KE consumption, compared with DEXT consumption. Temporally related to the observed suppression of ghrelin, reported hunger and desire to eat were also significantly suppressed 1.5 hours after consumption of KE, compared with consumption of DEXT.Conclusions:Increased blood ketone levels may directly suppress appetite, as KE drinks lowered plasma ghrelin levels, perceived hunger, and desire to eat.
2. Acid-Stable Ester Linkers for the Solid-Phase Synthesis of Immobilized Peptides
Jan Pícha, Miloš Buděšínský, Katarína Mitrová, Jiří Jiráček Chempluschem. 2020 Jun;85(6):1297-1306.doi: 10.1002/cplu.202000246.
A series of N-terminally Fmoc-protected linkers of the general formula Fmoc-X-CO-O-Y-COOH have been prepared, where X is -NH-CH2 -CH2 - or -p-(aminomethyl)phenyl- and Y is -(CH2 )n - (n is 1 or 4) or -p-(methyl)phenyl-. These linkers can easily be covalently attached via their C-terminal carboxyl group to a resin bearing a free amino group. After cleavage of the N-terminal Fmoc group, the linkers can be extended by standard solid-phase peptide synthesis techniques. These ester linkers are acid-stable and resistant to the base-mediated diketopiperazine formation that often occurs during the synthesis of ester-bound peptides; they are stable at neutral pH in aqueous buffers for days but can be effectively cleaved with 0.1 m NaOH or aq. ammonia within minutes or hours, respectively. These properties make these ester handles well suited for use as linkers for the solid-phase peptide synthesis of immobilized peptides when the stable on-resin immobilization of the peptides and the testing of their biological properties in aqueous buffers at neutral pH are necessary.
3. Synthesis of ester-linked lithocholic acid dimers
Lutfun Nahar, Alan B Turner Steroids. 2003 Dec;68(14):1157-61.doi: 10.1016/j.steroids.2003.08.015.
Four lithocholic acid dimers were synthesised via esterification. The ester-linked dimer, 3-oxo-5beta-cholan-24-oic acid (cholan-24-oic acid methyl ester)-3-yl ester, (3alpha,5beta), was obtained by condensation of methyl lithocholate with 3-oxo-5beta-cholan-24-oic acid. Borohydride reduction of this ester-linked dimer gave 3alpha-hydroxy-5beta-cholan-24-oic acid (cholan-24-oic acid methyl ester)-3-yl ester, (3alpha,5beta), which was acetylated to 3alpha-acetoxy-5beta-cholan-24-oic acid (cholan-24-oic acid methyl ester)-3-yl ester, (3alpha,5beta). Reaction of methyl lithocholate with oxalyl chloride yielded the oxalate dimer, bis(5beta-cholan-24-oic acid methyl ester)-3alpha-yl oxalate.

Acid-PEG13-NHS ester is a polyethylene glycol (PEG)-based linker designed for efficient conjugation in PROTAC workflows. Its NHS-ester functionality enables rapid formation of stable amide bonds with primary amines, supporting the modular assembly of bifunctional degraders. The PEG spacer improves solubility and can help tune linker flexibility and effective distances between target-binding and E3-ligase-binding modules. Detailed structural and reaction considerations are provided below.

Structure: The linker combines an activated N-hydroxysuccinimide ester with a PEG chain and a terminal carboxylic acid. It contains an amide-forming NHS ester, ether linkages within the PEG backbone, and a carboxyl group for further derivatization. Overall, it is typically water-compatible and conformationally flexible.

Reactivity: The NHS ester reacts with primary amines to form amide bonds via nucleophilic acyl substitution. Suitable conditions generally use mildly basic aqueous buffers that maintain amine nucleophilicity while limiting hydrolysis of the activated ester. Common solvents include aqueous buffer systems with optional polar cosolvents. No special catalysts are required; careful control of pH and stoichiometry is important to balance coupling efficiency against hydrolysis.

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Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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