Azido-PEG3-aminoacetic acid-NHS ester
Azido-PEG3-aminoacetic acid-NHS ester is a heterobifunctional PEG-based linker designed for PROTAC assembly and other targeted conjugations. Structurally, it combines a terminal azide handle for bioorthogonal click chemistry with an NHS ester that reacts with primary amines on ligands or other PROTAC components, enabling covalent attachment under standard amide-forming conditions. The PEG3 segment provides aqueous solubility and conformational flexibility, which can reduce steric interference between the recruiting ligand and the target-binding moiety, thereby supporting productive formation of the ternary complex. In PROTAC design, this linker mediates the stable conjugation of two molecular domains while preserving functional group accessibility for subsequent steps such as azide–alkyne cycloaddition. Its value lies in providing a modular, chemically robust route to generate defined linker lengths and attachment geometries, facilitating systematic structure–activity relationship studies and optimization of targeted protein degradation constructs.
Structure of 2170240-91-0
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* For research and manufacturing use only. Not for human or clinical use.
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Azido-PEG3-aminoacetic acid-NHS ester is a heterobifunctional PEG-based linker designed for assembling PROTACs and related targeted protein degradation constructs. It combines an NHS ester for efficient acylation of amine-bearing ligands with a terminal azide handle that enables orthogonal conjugation via established “click” chemistry. This dual-reactivity improves modular synthesis, supports flexible linker installation, and facilitates rapid optimization of degrader architectures. Detailed structural and reactivity considerations are provided below.
Structure: The linker contains a polyethylene glycol segment terminating in an azide group and an aminoacetic acid motif, capped by an N-hydroxysuccinimide ester. It features stable ether linkages in the PEG chain and an activated carboxylate, enabling selective amide bond formation under mild conditions.
Reactivity: The NHS ester reacts with primary amines to form stable amide bonds, typically using nucleophilic buffering bases and anhydrous or low-water organic solvent systems to preserve ester reactivity. The azide moiety can be coupled to complementary alkyne partners through copper-catalyzed or strain-promoted azide–alkyne cycloaddition, yielding a triazole linkage. Reaction design should consider ligand functional group compatibility and minimize conditions that hydrolyze the NHS ester.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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