Azido-PEG3-aminoacetic acid-NHS ester

 CAS No.: 2170240-91-0  Cat No.: BP-501035  Purity: 98% 4.5  

Azido-PEG3-aminoacetic acid-NHS ester is a heterobifunctional PEG-based linker designed for PROTAC assembly and other targeted conjugations. Structurally, it combines a terminal azide handle for bioorthogonal click chemistry with an NHS ester that reacts with primary amines on ligands or other PROTAC components, enabling covalent attachment under standard amide-forming conditions. The PEG3 segment provides aqueous solubility and conformational flexibility, which can reduce steric interference between the recruiting ligand and the target-binding moiety, thereby supporting productive formation of the ternary complex. In PROTAC design, this linker mediates the stable conjugation of two molecular domains while preserving functional group accessibility for subsequent steps such as azide–alkyne cycloaddition. Its value lies in providing a modular, chemically robust route to generate defined linker lengths and attachment geometries, facilitating systematic structure–activity relationship studies and optimization of targeted protein degradation constructs.

Azido-PEG3-aminoacetic acid-NHS ester

Structure of 2170240-91-0

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Category
PROTAC Linker
Molecular Formula
C₁₄H₂₃N₅O₇
Molecular Weight
373.36

* For research and manufacturing use only. Not for human or clinical use.

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Purity
98%
Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
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Room temperature in continental US; may vary elsewhere.
IUPACName
(2,5-dioxopyrrolidin-1-yl) 2-[2-[2-[2-(2-azidoethoxy)ethoxy]ethoxy]ethylamino]acetate
Synonyms
AZIDO-PEG3-AMINOACETICACID-NHSESTER; 2,5-dioxopyrrolidin-1-yl 1-azido-3,6,9-trioxa-12-azatetradecan-14-oate; (2,5-dioxopyrrolidin-1-yl) 2-[2-[2-[2-(2-azidoethoxy)ethoxy]ethoxy]ethylamino]acetate
InChI Key
LLFDDJSHNLEEBA-UHFFFAOYSA-N
InChI
InChI=1S/C14H23N5O7/c15-18-17-4-6-24-8-10-25-9-7-23-5-3-16-11-14(22)26-19-12(20)1-2-13(19)21/h16H,1-11H2
SMILES
C1CC(=O)N(C1=O)OC(=O)CNCCOCCOCCOCCN=[N+]=[N-]
1. The preparation of poly(γ-glutamic acid)-NHS ester as a natural cross-linking agent of collagen
Junhui Yang, Cuicui Ding, Liulian Huang, Min Zhang, Lihui Chen Int J Biol Macromol. 2017 Apr;97:1-7.doi: 10.1016/j.ijbiomac.2016.12.070.Epub 2017 Jan 3.
γ-PGA-NHS ester, which was prepared using poly(γ-glutamic acid) (γ-PGA) and N-hydroxysuccinimide (NHS) as the raw materials, was synthesized to be a novel cross-linker of collagen. Fourier transform infrared spectra analysis suggested that the products displayed the characteristic absorption peak of ester. Results from nuclear magnetic resonance analysis indicated that the esterification degree of γ-PGA-NHS ester was increased with the increase of NHS. Modified collagen was prepared and characterized. The results of circular dichroism analysis indicated modified collagen retained the triple helix structure of natural collagen. Sodium dodecyl sulphate polyacrylamide gel electrophoresis revealed that the molecular weight of collagen was increased after cross-linking. Peptide mapping of collagen suggested that cross-linked collagen possessed an enhanced resistance to trypsin degradation. Differential scanning calorimeter results showed that the denaturation temperature of collagen was improved from 68.1±0.4 to 91.2±0.5°C (p<0.05). Dynamic viscoelastic measurements demonstrated the improvement of thermal stability and reflected the exponential increase in η*. The cross-linked collagen retained porous structure and the pore size became larger as observed by scanning electron microscopy. The investigation results provided useful information to produce collagen with improved physicochemical properties, particularly the thermal stability via the use of γ-PGA-NHS ester as a biomacromolecule-based cross-linker.
2. Fluorescence studies on the aggregation behaviors of collagen modified with NHS-activated poly(γ-glutamic acid)
Min Zhang, Junhui Yang, Qili Yang, Liulian Huang, Hui Wu, Lihui Chen, Cuicui Ding Int J Biol Macromol. 2018 Jun;112:1156-1163.doi: 10.1016/j.ijbiomac.2018.02.027.Epub 2018 Feb 6.
The poly(γ-glutamic acid)-NHS (γ-PGA-NHS) esters were used to endow collagen with both of excellent water-solubility and thermal stability via cross-linking reaction between γ-PGA-NHS and collagen. In the present work, the effect of γ-PGA-NHS on the aggregation of collagen molecules was studied by fluorescence techniques. The fluorescence emission spectra of pyrene in collagen solutions and the intrinsic fluorescence emission spectra of collagen suggested different effects of γ-PGA-NHS on collagen molecules: inhibiting aggregation below critical aggregation concentration (CAC) and promoting aggregation above CAC. The two-dimensional (2D) fluorescence correlation spectra indicated that the intermolecular hydrogen bonding and cross-linking between γ-PGA-NHS and collagen would influence the aggregation of collagen molecules. By the ultra-sensitive differential scanning calorimeter (VP-DSC), it was found that the main denaturational transition temperature (Tm2) of modified collagen increased, while its calorimetric enthalpy changes (ΔH2) decreased compared to those of native collagen, further indicating that the modification of γ-PGA-NHS influenced the aggregation of collagen molecules. The study provide useful information for the utilizing and or the processing of water-soluble collagen in aqueous solution in the fields such as cosmetics, health care products, tissue engineering and biomedical materials, etc.
3. Insight into the rheological behaviors of a polyanionic collagen fabricated with poly(γ-glutamic acid)-NHS ester
Cuicui Ding, Junhui Yang, Fei Lan, Zhigong Zheng, Libo Dai, Min Zhang Biotechnol Appl Biochem. 2019 Jul;66(4):564-573.doi: 10.1002/bab.1755.Epub 2019 May 9.
The rheological behaviors of a polyanionic collagen, fabricated using poly(γ-glutamic acid)-N-hydroxysuccinimide (γ-PGA-NHS) as a novel modifier, were investigated in this study. It was found that both of the native and modified collagen solutions were pseudoplastic fluids, as shown from the steady-shear tests. While the storage modulus and loss modulus of collagen increased with increasing the amount of γ-PGA-NHS, or with increasing the degree of esterification of γ-PGA-NHS; meanwhile, the dynamic denaturation temperature determined by dynamic temperature sweep was also increased, indicating an improved thermal stability of collagen solution modified by γ-PGA-NHS. The creep-recovery measurements showed that the resistance to deformation was enhanced for modified collagen, probably due to the cross-linking occurred between the ε-amino groups of collagen molecules and α-COOH groups of γ-PGA-NHS, as well as the electrostatic interaction and hydrogen-bond interactions between the two molecules. Furthermore, the aggregation of collagen fibers was promoted due to these interactions between collagen and γ-PGA-NHS as observed by atomic force morphology. In addition, the modified collagen exhibited good cytocompatibility as demonstrated by cell growth culturing. The obtained information was expected to give valuable clues to the design and fabrication of controlled stable collagen-based products for applications in various biomedical fields.

Azido-PEG3-aminoacetic acid-NHS ester is a heterobifunctional PEG-based linker designed for assembling PROTACs and related targeted protein degradation constructs. It combines an NHS ester for efficient acylation of amine-bearing ligands with a terminal azide handle that enables orthogonal conjugation via established “click” chemistry. This dual-reactivity improves modular synthesis, supports flexible linker installation, and facilitates rapid optimization of degrader architectures. Detailed structural and reactivity considerations are provided below.

Structure: The linker contains a polyethylene glycol segment terminating in an azide group and an aminoacetic acid motif, capped by an N-hydroxysuccinimide ester. It features stable ether linkages in the PEG chain and an activated carboxylate, enabling selective amide bond formation under mild conditions.

Reactivity: The NHS ester reacts with primary amines to form stable amide bonds, typically using nucleophilic buffering bases and anhydrous or low-water organic solvent systems to preserve ester reactivity. The azide moiety can be coupled to complementary alkyne partners through copper-catalyzed or strain-promoted azide–alkyne cycloaddition, yielding a triazole linkage. Reaction design should consider ligand functional group compatibility and minimize conditions that hydrolyze the NHS ester.

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* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O √ c22h30n40 ╳
g/mol
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