4,7,10,13,16,19,22,25,28,31,34-Undecaoxaheptatriaconta-1,36-diyne
4,7,10,13,16,19,22,25,28,31,34-Undecaoxaheptatriaconta-1,36-diyne is a poly(ethylene glycol)–like ether linker built from a long sequence of repeating oxyethylene units terminating in two alkyne handles. The extended, flexible oxygen-rich chain provides substantial conformational freedom and aqueous compatibility, while the terminal diyne functionality enables orthogonal chemical conjugation to PROTAC-relevant fragments through alkyne-based coupling strategies (e.g., click-type or related alkyne reactivity) under conditions commonly used for linker assembly. In PROTAC design, such a long, hydrophilic tether is used to tune the effective distance and relative orientation between the targeting ligand and the E3 ligase–binding moiety, thereby improving formation of the ternary complex and supporting efficient ubiquitination-mediated degradation. This linker is valuable for researchers seeking modular synthesis of targeted protein degraders where linker length, polarity, and attachment geometry are key variables to optimize potency and selectivity.
Structure of 1351373-48-2
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* For research and manufacturing use only. Not for human or clinical use.
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This PROTAC linker, 4,7,10,13,16,19,22,25,28,31,34-Undecaoxaheptatriaconta-1,36-diyne, is designed to provide a rigid, extended molecular scaffold that can span distances between a targeting ligand and an E3 ligase-recruiting moiety. Its polyether character supports conformational flexibility while the diyne functionality enables robust, chemistry-compatible attachment strategies commonly used in targeted protein degradation workflows. Detailed structural and reactivity considerations are provided below to guide experimental design.
Structure: The linker contains multiple ether linkages that impart polarity and segmental flexibility, along with two alkyne units that serve as defined reactive handles. Its structure supports an extended, low-steric scaffold with conjugated unsaturation suitable for bond-forming transformations under standard organic synthesis conditions.
Reactivity: The terminal alkyne motifs are compatible with coupling and click-type bond formation approaches used to assemble PROTACs, including alkyne–electrophile conjugations and alkyne-enabled cycloaddition chemistry. Typical preparations rely on inert atmospheres, dry polar aprotic solvents, and base or catalyst systems appropriate to the chosen coupling manifold. Mechanistically, bond formation proceeds via activation of the alkyne π-system or formation of a reactive intermediate that links the linker to complementary functional groups on ligands.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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