DBCO-(PEG2-Val-Cit-PAB)2

 Cat No.: BP-501940  Purity: >98.0% 4.5  

DBCO-(PEG2-Val-Cit-PAB)2 is a dual-arm, click-reactive PROTAC linker platform that combines a dibenzocyclooctyne (DBCO) handle for strain-promoted azide–alkyne cycloaddition (SPAAC) with a PEG2 spacer and a protease-cleavable Val–Cit–PAB motif repeated twice. Structurally, each arm incorporates a short polyethylene glycol segment that provides aqueous solubility and conformational flexibility, followed by the Valine–Citrulline–para-aminobenzyl (PAB) sequence commonly used to enable lysosomal processing after cellular uptake. In PROTAC or targeted degradation constructs, the DBCO group enables efficient conjugation to azide-functional ligands (e.g., warheads or targeting modules) without copper catalysis, while the cleavable linker design supports intracellular release of the active degradation payload. This product is valuable for researchers optimizing linker-mediated kinetics, intracellular trafficking, and degradation efficiency, particularly when modular assembly and reliable, catalyst-free click coupling are required.

DBCO-(PEG2-Val-Cit-PAB)2

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Category
PROTAC Linker
Molecular Formula
C69H94N12O16
Molecular Weight
1347.56

* For research and manufacturing use only. Not for human or clinical use.

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  • Comprehensive PROTAC Platform
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Popular Publications Citing BOC Sciences Products
Purity
>98.0%
Solubility
10 mm in DMSO
ShelfLife
-20°C 3 years powder; -80°C 2 years in solvent
Storage
-20°C
Shipping
-20°C (International: -20°C)
IUPACName
InChI Key
OJIQRDAILYOKEI-MBSGQPJDSA-N
InChI
InChI=1S/C69H94N12O16/c1-46(2)62(66(90)76-55(14-9-31-72-68(70)92)64(88)74-53-23-17-48(44-82)18-24-53)78-58(84)29-35-94-39-41-96-37-33-80(60(86)27-28-61(87)81-43-52-13-6-5-11-50(52)21-22-51-12-7-8-16-57(51)81)34-38-97-42-40-95-36-30-59(85)79-63(47(3)4)67(91)77-56(15-10-32-73-69(71)93)65(89)75-54-25-19-49(45-83)20-26-54/h5-8,11-13,16-20,23-26,46-47,55-56,62-63,82-83H,9-10,14-15,27-45H2,1-4H3,(H,74,88)(H,75,89)(H,76,90)(H,77,91)(H,78,84)(H,79,85)(H3,70,72,92)(H3,71,73,93)/t55-,56-,62-,63-/m0/s1
SMILES
CC(C)C(C(=O)NC(CCCNC(=O)N)C(=O)NC1=CC=C(C=C1)CO)NC(=O)CCOCCOCCN(CCOCCOCCC(=O)NC(C(C)C)C(=O)NC(CCCNC(=O)N)C(=O)NC2=CC=C(C=C2)CO)C(=O)CCC(=O)N3CC4=CC=CC=C4C#CC5=CC=CC=C53
1. Discovery of new ferroelectrics: [H2dbco]2 x [Cl3] x [CuCl3(H2O)2] x H2O (dbco = 1,4-Diaza-bicyclo[2.2.2]octane)
Wen Zhang, Heng-Yun Ye, Hong-Ling Cai, Jia-Zhen Ge, Ren-Gen Xiong, Songping D Huang J Am Chem Soc. 2010 Jun 2;132(21):7300-2.doi: 10.1021/ja102573h.
Compound [H(2)dbco](2) x [Cl(3)] x [CuCl(3)(H(2)O)(2)] x H(2)O undergoes a sharp dielectric anomaly and a paraelectric-to-ferroelectric phase transition at approximately -23 degrees C with a spontaneous polarization of 1.04 microC cm(-2), being the first molecular metal coordination compound ferroelectrics with a large dielectric response involving a 2 orders of magnitude enhancement and distinct Curie phase transition point. This work has proved an effective way for exploration of new ferroelectrics based on a five-coordinated divalent metal through the combination of crystal engineering and Landau phase transition theory.
2. Multi-antitumor therapy and synchronous imaging monitoring based on exosome
Ruijie Qian, Boping Jing, Dawei Jiang, Yongkang Gai, Ziyang Zhu, Xiaojuan Huang, Yu Gao, Xiaoli Lan, Rui An Eur J Nucl Med Mol Imaging. 2022 Jul;49(8):2668-2681.doi: 10.1007/s00259-022-05696-x.Epub 2022 Jan 29.
Background:Tumor-derived exosomes (TEX) have shown great potential for drug delivery and tumor targeting. Here, we developed a novel multi-drug loaded exosomes nanoprobe for combined antitumor chemotherapy and photodynamic therapy, and monitoring the drug delivery capabilities with pre-targeting technique.
3. Engineered DBCO+PD-1 Nanovesicles Carrying 1-MT for Cancer-Targeted Immunotherapy
Xichao Xu, Liang Liu, Huan Wang, Wenwen Li, Yigui Zou, Yinzhen Zeng, Qinghua Yang, Daming Bai, Dongling Dai ACS Biomater Sci Eng. 2022 Nov 14;8(11):4819-4826.doi: 10.1021/acsbiomaterials.2c00639.Epub 2022 Oct 7.
Liver cancer cells evade immune surveillance and anticancer response through various pathways, including the programmed death-ligand 1 (PD-L1)/programmed death-1 (PD-1) immune checkpoint axis that exhausts CD8+ T cells. Inhibitors or antibodies of the PD-L1/PD-1 signaling axis are considered promising drugs for cancer immunotherapy and exhibit favorable clinical responses. However, adverse effects, immune tolerance, and delivery barriers of most patients limit the clinical application of PD-L1/PD-1 antibodies. Thus, it is critical to develop a novel delivery strategy to enhance anticancer immunotherapy. In this study, we bioengineered cell membrane-derived nanovesicles (NVs) presenting PD-1 proteins and dibenzocyclooctyne (DBCO) to encapsulate 1-methyltryptophan (1-MT) (DBCO+PD-1@1-MT NVs). DBCO can specifically interact with N-azidoacetylmannosamine-tetraacetylate (Ac4ManN3) labeled onto metabolic cells for targeted killing of cancers. We next explored the effects of DBCO+PD-1@1-MT NVs on anticancer Hepa1-6 cells in vitro and in vivo. Results showed that PD-1@1-MT NVs dramatically inhibited Hepa1-6 proliferation, promoted peripheral blood mononuclear cell (PBMC) expansion, and strengthened anticancer therapy via blockading the PD-1/PD-L1 immune checkpoint axis, owing to the 1-methyltryptophan (1-MT) enhancement of anticancer immunotherapy efficacy through suppressing the activity of indoleamine 2,3-dioxygenase (IDO). Thus, 1-MT was encapsulated into PD-1 NVs to synergistically enhance cancer immunotherapy. Results have shown that PD-1@1-MT NVs obviously attenuated tumor growth, promoting IFN-γ production, increasing the T cells infiltration in tumors and spleens, and improving the survival period of tumor-bearing mice compared to monotherapy. Therefore, we propose a promising delivery strategy of the combination of DBCO+PD-1 NVs and 1-MT for specific and effective cancer-targeted immunotherapy.

This DBCO-functionalized PEG-based PROTAC linker is designed to support efficient, modular assembly of targeted protein degraders via bioorthogonal conjugation. Its architecture combines a strained cyclooctyne handle for rapid click coupling with a flexible polyethylene glycol segment and protease-cleavable peptide motifs to promote controlled intracellular processing. These features help researchers build PROTAC constructs with improved conjugation efficiency and tunable degradation kinetics; detailed structural and reaction considerations are provided below.

Structure: The linker contains a dibenzocyclooctyne (DBCO) moiety for strain-promoted azide–alkyne cycloaddition, connected through a PEG spacer to a valine–citrulline–para-aminobenzyl (Val–Cit–PAB) peptide unit repeated as a dipeptidic motif. It incorporates amide and ether linkages, with flexible segments that enhance solubility and conformational adaptability.

Reactivity: Use strain-promoted azide–alkyne cycloaddition to couple the DBCO handle to azide-bearing ligands under mild, catalyst-free conditions typical for bioorthogonal click chemistry. Prepare conjugations in commonly used aqueous buffer systems or compatible organic/aqueous mixtures to maintain peptide integrity and solubility. The mechanism proceeds via cycloaddition to form a stable triazole linkage, enabling efficient PROTAC assembly without metal catalysts that could otherwise affect sensitive functional groups.

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* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

* Total Molecular Weight:
g/mol
Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
g/mol
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