DBCO-(PEG2-Val-Cit-PAB)2 is a dual-arm, click-reactive PROTAC linker platform that combines a dibenzocyclooctyne (DBCO) handle for strain-promoted azide–alkyne cycloaddition (SPAAC) with a PEG2 spacer and a protease-cleavable Val–Cit–PAB motif repeated twice. Structurally, each arm incorporates a short polyethylene glycol segment that provides aqueous solubility and conformational flexibility, followed by the Valine–Citrulline–para-aminobenzyl (PAB) sequence commonly used to enable lysosomal processing after cellular uptake. In PROTAC or targeted degradation constructs, the DBCO group enables efficient conjugation to azide-functional ligands (e.g., warheads or targeting modules) without copper catalysis, while the cleavable linker design supports intracellular release of the active degradation payload. This product is valuable for researchers optimizing linker-mediated kinetics, intracellular trafficking, and degradation efficiency, particularly when modular assembly and reliable, catalyst-free click coupling are required.
* For research and manufacturing use only. Not for human or clinical use.
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This DBCO-functionalized PEG-based PROTAC linker is designed to support efficient, modular assembly of targeted protein degraders via bioorthogonal conjugation. Its architecture combines a strained cyclooctyne handle for rapid click coupling with a flexible polyethylene glycol segment and protease-cleavable peptide motifs to promote controlled intracellular processing. These features help researchers build PROTAC constructs with improved conjugation efficiency and tunable degradation kinetics; detailed structural and reaction considerations are provided below.
Structure: The linker contains a dibenzocyclooctyne (DBCO) moiety for strain-promoted azide–alkyne cycloaddition, connected through a PEG spacer to a valine–citrulline–para-aminobenzyl (Val–Cit–PAB) peptide unit repeated as a dipeptidic motif. It incorporates amide and ether linkages, with flexible segments that enhance solubility and conformational adaptability.
Reactivity: Use strain-promoted azide–alkyne cycloaddition to couple the DBCO handle to azide-bearing ligands under mild, catalyst-free conditions typical for bioorthogonal click chemistry. Prepare conjugations in commonly used aqueous buffer systems or compatible organic/aqueous mixtures to maintain peptide integrity and solubility. The mechanism proceeds via cycloaddition to form a stable triazole linkage, enabling efficient PROTAC assembly without metal catalysts that could otherwise affect sensitive functional groups.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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