endo-BCN-PEG2-PFP ester

 CAS No.: 1421932-53-7  Cat No.: BP-501410  Purity: ≥98% 4.5  

Endo-BCN-PEG2-PFP ester is a bifunctional PROTAC linker reagent designed for chemoselective conjugation and subsequent assembly of targeted protein degraders. Structurally, it combines an endo-bicyclononyne (BCN) strained-alkyne handle with a short, two–ethylene glycol unit polyethylene glycol (PEG2) spacer and a pentafluorophenyl (PFP) ester activated for acyl transfer. In PROTAC workflows, the BCN group enables rapid strain-promoted azide–alkyne cycloaddition with azide-bearing ligands or biomolecular partners, while the PFP ester provides a reactive electrophile to form stable amide or related linkages with primary amines. This dual functionality supports modular synthesis, allowing researchers to tether ligands to E3-recruiting or target-binding moieties with controlled spacing and improved solubility. The reagent is valuable for constructing well-defined conjugates that can be evaluated in targeted degradation experiments, including optimization of linker length and conjugation chemistry for efficient ternary complex formation.

endo-BCN-PEG2-PFP ester

Structure of 1421932-53-7

Quality
Assurance

Worldwide
Delivery

24/7 Customer
Support
Category
PROTAC Linker
Molecular Formula
C24H26F5NO6
Molecular Weight
519.46
Appearance
Soild powder

* For research and manufacturing use only. Not for human or clinical use.

SizePriceStockQuantity
-- $-- In stock

Looking for different specifications? Click to request a custom quote!

Capabilities & Facilities

  • Comprehensive PROTAC Platform
  • Scientific Expertise & Technical Support
  • Custom Synthesis & Design Service
  • Extensive Product Coverage
  • Cutting-Edge Innovation
  • Fast Delivery & Global Support
  • 24/7 customer service
  • 100% quality assurance
Popular Publications Citing BOC Sciences Products
Purity
≥98%
Solubility
DMSO, DCM, DMF
Appearance
Soild powder
Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Shipping
Room temperature, or blue ice upon request.
IUPACName
Synonyms
perfluorophenyl 1-(bicyclo[6.1.0]non-4-yn-9-yl)-3-oxo-2,7,10-trioxa-4-azatridecan-13-oate;
InChI Key
OQSLFTLVSWOAIW-UHFFFAOYSA-N
InChI
InChI=1S/C24H26F5NO6/c25-18-19(26)21(28)23(22(29)20(18)27)36-17(31)7-9-33-11-12-34-10-8-30-24(32)35-13-16-14-5-3-1-2-4-6-15(14)16/h14-16H,3-13H2,(H,30,32)
SMILES
C1CC2C(C2COC(=O)NCCOCCOCCC(=O)OC3=C(C(=C(C(=C3F)F)F)F)F)CCC#C1
1. A Ketone Ester Drink Lowers Human Ghrelin and Appetite
Brianna J Stubbs, Pete J Cox, Malgorzata Cyranka, Rhys D Evans, Heidi de Wet, Kieran Clarke Obesity (Silver Spring) . 2018 Feb;26(2):269-273. doi: 10.1002/oby.22051.
Objective:The ketones d-β-hydroxybutyrate (BHB) and acetoacetate are elevated during prolonged fasting or during a "ketogenic" diet. Although weight loss on a ketogenic diet may be associated with decreased appetite and altered gut hormone levels, it is unknown whether such changes are caused by elevated blood ketones. This study investigated the effects of an exogenous ketone ester (KE) on appetite.Methods:Following an overnight fast, subjects with normal weight (n = 15) consumed 1.9 kcal/kg of KE, or isocaloric dextrose (DEXT), in drinks matched for volume, taste, tonicity, and color. Blood samples were analyzed for BHB, glucose, insulin, ghrelin, glucagon-like peptide 1 (GLP-1), and peptide tyrosine tyrosine (PYY), and a three-measure visual analogue scale was used to measure hunger, fullness, and desire to eat.Results:KE consumption increased blood BHB levels from 0.2 to 3.3 mM after 60 minutes. DEXT consumption increased plasma glucose levels between 30 and 60 minutes. Postprandial plasma insulin, ghrelin, GLP-1, and PYY levels were significantly lower 2 to 4 hours after KE consumption, compared with DEXT consumption. Temporally related to the observed suppression of ghrelin, reported hunger and desire to eat were also significantly suppressed 1.5 hours after consumption of KE, compared with consumption of DEXT.Conclusions:Increased blood ketone levels may directly suppress appetite, as KE drinks lowered plasma ghrelin levels, perceived hunger, and desire to eat.
2. [Evaluation of the Oral Absorption of Ester-type Prodrugs]
Kayoko Ohura Yakugaku Zasshi . 2020;140(3):369-376. doi: 10.1248/yakushi.19-00225.
The first-pass hydrolysis of oral ester-type prodrugs in the liver and intestine is mediated mainly by hCE1 and hCE2 of the respective predominant carboxylesterase (CES) isozymes. In order to provide high blood concentrations of the parent drugs, it is preferable that prodrugs are absorbed as an intact ester in the intestine, then rapidly converted to active parent drugs by hCE1 in the liver. In the present study, we designed a prodrug of fexofenadine (FXD) as a model parent drug that is resistant to hCE2 but hydrolyzed by hCE1, utilizing the differences in catalytic characteristics of hCE1 and hCE2. In order to precisely predict the intestinal absorption of an FXD prodrug candidate, we developed a novel high-throughput system by modifying Caco-2 cells. Further, we evaluated species differences and aging effects in the intestinal and hepatic hydrolysis of prodrugs to improve the estimation of in vivo first-pass hydrolysis of ester-type prodrugs. Consequently, it was possible to design a hepatotropic prodrug utilizing the differences in tissue distribution and substrate specificity of CESs. In addition, we successfully established three useful in vitro systems for predicting the intestinal absorption of hCE1 substrate using Caco-2 cells. However, some factors involved in estimating the bioavailability of prodrugs in human, such as changes in recognition of drug transporters by esterification, and species differences of the first-pass hydrolysis, should be comprehensively considered in prodrug development.
3. Catalytic antibodies
A Tramontano, R A Lerner, K D Janda Science . 1986 Dec 19;234(4783):1566-70. doi: 10.1126/science.3787261.
Monoclonal antibodies elicited to haptens that are analogs of the transition state for hydrolysis of carboxylic esters behaved as enzymic catalysts with the appropriate substrates. These substrates are distinguished by the structural congruence of both hydrolysis products with haptenic fragments. The haptens were potent inhibitors of this esterolytic activity, in agreement with their classification as transition state analogs. Mechanisms are proposed to account for the different chemical behavior of these antibodies with two types of ester substrates. The generation of an artificial enzyme through transition state stabilization by antibodies was thus demonstrated. These studies indicate a potentially general approach to catalyst design.

Endo-BCN-PEG2-PFP ester is a PEG-based, BCN (bicyclononyne) functionalized linker designed for efficient PROTAC assembly and subsequent bioorthogonal conjugation. Its PEG spacer supports favorable solubility and linker flexibility, while the PFP ester enables robust acyl transfer to nucleophilic groups on targeting ligands. This combination supports modular synthesis workflows; the detailed structural and reactivity considerations are provided below.

Structure: The linker contains a BCN moiety for strain-promoted cycloaddition, connected through a short polyethylene glycol spacer to a pentafluorophenyl ester. It features ether linkages in the PEG segment and an activated carboxylate derived from the PFP leaving group, providing amphiphilic, water-compatible behavior.

Reactivity: The PFP ester is suitable for acylation reactions with nucleophiles such as amines or other appropriate functional groups under mild, base-assisted conditions commonly used for ester-to-amide or ester-to-derivative formation. The BCN group enables catalyst-free, strain-promoted cycloaddition with complementary partners, typically proceeding in aqueous or mixed solvent systems. For PROTAC construction, this supports sequential coupling of the targeting ligand followed by bioorthogonal conjugation, with solvent choice guided by nucleophile solubility and stability of the ester.

Stock concentration: *
Desired final volume: *
Desired concentration: *

L

* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

* Total Molecular Weight:
g/mol
Tip: Chemical formula is case sensitive. C22H30N4O √ c22h30n40 ╳
g/mol
g

Related Product Recommendations

BOC Sciences Support

Please contact us with any specific requirements and we will get back to you as soon as possible.


  • Verification code
Inquiry Basket