Methyl-PEG4-acyl chloride
Methyl-PEG4-acyl chloride is an acyl chloride–functionalized polyethylene glycol (PEG) linker designed for PROTAC synthesis and other bioconjugation workflows. Structurally, it comprises a methyl-terminated PEG chain of four ethylene glycol units bearing a reactive acyl chloride at one end, enabling efficient formation of amide bonds with amine-containing ligands under standard acylation conditions. In PROTAC architectures, such PEG-based linkers are widely used to tune the effective distance, conformational flexibility, and solvation of the conjugate, which can improve productive ternary complex formation between a target-binding moiety and an E3 ligase ligand. The acyl chloride handle provides a straightforward route to install the linker onto carboxylate or amine-bearing components, facilitating modular assembly of degraders. Its PEG character can also enhance aqueous compatibility and reduce nonspecific hydrophobic interactions, supporting more reproducible linker-mediated coupling during targeted protein degradation research.
Structure of 62124-69-0
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Methyl-PEG4-acyl chloride is a PEG-based acylating linker designed for efficient conjugation in targeted protein degradation workflows. Its activated acyl chloride functionality enables rapid formation of stable amide bonds with compatible ligands, while the PEG spacer supports favorable solubility and linker flexibility that can improve PROTAC assembly and performance. The following sections describe the molecule’s structure and practical reactivity considerations in detail.
Structure: The linker comprises a methyl-substituted PEG segment terminated by an acyl chloride. It contains ether linkages within the PEG chain and a reactive carbonyl chloride at the terminus. The combination typically yields a polar, water-compatible scaffold that can enhance solubility and conformational flexibility in PROTAC constructs.
Reactivity: The acyl chloride group readily undergoes nucleophilic acyl substitution with amines to form amides, a common strategy for assembling PROTAC linkers. Reactions are typically performed under anhydrous, inert conditions to minimize hydrolysis, using base to scavenge generated hydrogen chloride. Suitable solvents include polar aprotic media, and coupling is often monitored by consumption of the acyl chloride and appearance of the amide product.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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