mPEG3-acetic acid is a methoxy-poly(ethylene glycol) acetic acid derivative featuring a short, terminally carboxylated PEG chain that provides both aqueous solubility and a defined hydrophilic spacer. In PROTAC and targeted protein degradation workflows, such PEG–carboxylate linkers are commonly employed to tune physicochemical properties of the final conjugate, including reducing nonspecific hydrophobic interactions, improving formulation in buffer, and modulating the effective distance and flexibility between a ligand-bearing warhead and the recruited E3 ligase moiety. The terminal carboxylic acid enables straightforward amide coupling or other carboxyl-reactive conjugation strategies to attach the PEG spacer to neighboring functional groups on PROTAC scaffolds. This makes mPEG3-acetic acid a useful building block for constructing degraders with improved handling and more consistent linker behavior during synthesis, purification, and subsequent cellular or biochemical evaluation.
Structure of 16024-60-5
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This mPEG3-acetic acid linker is designed to provide a compact, hydrophilic polyethylene glycol segment capped with a carboxylic acid handle for downstream conjugation in targeted protein degradation workflows. Its PEG-based architecture supports improved aqueous solubility and can help tune linker polarity and overall PROTAC physicochemical behavior. The following sections describe its structural features and practical reactivity considerations for constructing PROTACs using this building block.
Structure: The molecule comprises a short methoxy-terminated polyethylene glycol chain linked to an acetic acid moiety. It contains ether linkages within the PEG segment and a terminal carboxylic acid functional group, enabling robust hydrogen-bonding interactions and amphiphilic behavior in aqueous media.
Reactivity: The carboxylic acid group is suitable for amide-bond formation with primary or activated amine partners commonly used in PROTAC assembly. Typical approaches include carbodiimide-mediated coupling or use of activated acid derivatives under mild, aqueous or mixed-solvent conditions, often with base to promote nucleophilic acyl substitution. Careful control of pH and reagent compatibility is recommended to preserve PEG integrity and minimize side reactions.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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