Pomalidomide-PEG3-C2-NH2 hydrochloride

 CAS No.: 2446474-09-3  Cat No.: BP-100134 4.5  

Pomalidomide-PEG3-C2-NH2 hydrochloride is a versatile E3 Ligase Ligand-Linker Conjugate specifically designed for use in PROTAC (Proteolysis Targeting Chimera) drug development. This compound incorporates the well-characterized E3 ligase ligand, pomalidomide—a derivative of thalidomide known to bind cereblon (CRBN)—linked via a PEG3 (triethylene glycol) and short alkyl (C2) linker, terminating with a terminal amine group. The hydrochloride salt form enhances solubility and stability for research applications. Pomalidomide-PEG3-C2-NH2 hydrochloride serves as a crucial intermediate for the synthesis of bifunctional PROTAC molecules, facilitating the recruitment of the CRBN E3 ubiquitin ligase. By connecting a target protein ligand to pomalidomide via an optimized PEG-based linker, researchers can create custom PROTACs that harness the cellular ubiquitin-proteasome system, enabling targeted protein degradation. This compound is suitable for advancing next-generation therapeutic research, especially in cancer, neurodegenerative disorders, and other diseases driven by dysregulated or "undruggable" proteins.

Pomalidomide-PEG3-C2-NH2 hydrochloride

Structure of 2446474-09-3

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E3 Ligase Ligand-Linker Conjugate
Molecular Formula
C₂₁H₂₉ClN₄O₇
Molecular Weight
484.93

* For research and manufacturing use only. Not for human or clinical use.

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100 mg $298 In stock

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Desiccate at RT
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IUPACName
4-[2-[2-[2-(2-aminoethoxy)ethoxy]ethoxy]ethylamino]-2-(2,6-dioxopiperidin-3-yl)isoindole-1,3-dione;hydrochloride
Synonyms
Cereblon Ligand-Linker Conjugates 5 hydrochloride; E3 ligase Ligand-Linker Conjugates 30 hydrochloride
InChI Key
QWILZBRPTQSQLW-UHFFFAOYSA-N
InChI
1S/C21H28N4O7.ClH/c22-6-8-30-10-12-32-13-11-31-9-7-23-15-3-1-2-14-18(15)21(29)25(20(14)28)16-4-5-17(26)24-19(16)27;/h1-3,16,23H,4-13,22H2,(H,24,26,27);1H
Canonical SMILES
NCCOCCOCCOCCNC1=C2C(N(C(C2=CC=C1)=O)C3CCC(NC3=O)=O)=O.Cl
Pub Chem ID
154573025

Background Introduction

Pomalidomide-PEG3-C2-NH2 hydrochloride is a versatile E3 ligase ligand-linker conjugate specifically engineered for use in targeted protein degradation technologies such as PROTACs (Proteolysis Targeting Chimeras). As a derivative of pomalidomide (a thalidomide analogue and cereblon recruiter), this product enables the recruitment of the CRBN E3 ubiquitin ligase, while its PEG3-C2-NH2 linker improves solubility and flexibility for conjugation with various target-binding ligands.

Mechanism

This conjugate functions through the formation of a bifunctional molecule, in which pomalidomide binds to the cereblon (CRBN) E3 ubiquitin ligase complex, and the terminal amine (NH2) serves as a reactive handle for coupling with a ligand for a protein of interest. The PEG3-C2 linker provides both hydrophilicity and optimal spatial arrangement to facilitate efficient ubiquitination. Upon successful PROTAC assembly, the designed molecule brings the target protein into proximity with the E3 ligase, promoting polyubiquitination and subsequent proteasomal degradation of the target protein.

Applications

Pomalidomide-PEG3-C2-NH2 hydrochloride is primarily applied in the development of PROTACs and other targeted protein degradation research. It serves as a critical building block for medicinal chemists designing novel bifunctional degraders aimed at disease-relevant proteins. Its utility extends to cellular and in vitro studies investigating the roles of undruggable targets, validating new therapeutic targets, and expediting drug discovery programs by providing a modular component for custom PROTAC synthesis.

• Flexible PEG3 linker improves solubility and membrane permeability for efficient PROTAC development.
• Amine functionality enables facile conjugation to targeting ligands for streamlined CRBN-based PROTAC synthesis.
1. Iodine-Catalyzed Diazenylation with Arylhydrazine Hydrochlorides in Air
Shashikant U Dighe, Dinesh S Barak, Sanjay Batra, Ilesha Avasthi J Org Chem . 2018 Apr 6;83(7):3537-3546. doi: 10.1021/acs.joc.7b03149.
A mild approach to diazenylation of active methylene compounds and N-heterocyclic compounds with arylhydrazine hydrochlorides in the presence of iodine under basic aerobic conditions was developed. The reaction could be executed either under heating or in the presence of blue LED light, though the latter condition was found to be relatively efficient. Presumably, the aryldiazene produced by oxidation of arylhydrazine hydrochloride acts as a nitrogen scavenger of the radical intermediate generated from the active methylene compound in the presence of iodine to produce the diazo compounds. The scope and limitations of the protocol are presented.
2. Antiparasitic activities of new lawsone Mannich bases
Rainer Schobert, Bernhard Biersack, Isabel Winter, Klaus Ersfeld, Adil A H Mujawah, Waleed S Koko, Ibrahim Al Nasr, Tariq A Khan, Jana Jentzsch Arch Pharm (Weinheim) . 2019 Nov;352(11):e1900128. doi: 10.1002/ardp.201900128.
A series of new lawsone Mannich bases derived from salicylaldehydes or nitrofurfural were prepared and tested for their activities against Leishmania major, Toxoplasma gondii, and Trypanosoma brucei brucei parasites. The hydrochloride salts 5a and 6a of the Mannich bases 2a and 3a, derived from unsubstituted salicylaldehyde and long-chained alkyl amines, were selectively and strongly active against T. gondii cells and appear to be new promising drug candidates against this parasite. Compound 6a showed an even higher activity against T. gondii than the known lawsone Mannich base 1b. Compound 4a, derived from salicylaldehyde and 2-methylaminopyridine, was also distinctly active against T. gondii cells. The derivatives 3a (salicyl derivative), 3b (3,5-dichloro-2-hydroxyphenyl derivative), and 3d (5-nitrofuranyl derivative) as well as the hydrochlorides 6a and 6b were also efficacious against T. b. brucei cells with compounds 3a and 3b being more selective for T. b. brucei over Vero cells when compared with the known control compound 1b. The derivatives 5a, 5c, 6a, and 6c proved to be up to five times more active than 1b against L. major promastigotes and up to four times more efficacious against L. major amastigotes.
3. Carteolol
No data are available for the use of carteolol during breastfeeding. Because its excretion into breastmilk is probably extensive, other beta-adrenergic blocking drugs are preferred to oral carteolol while breastfeeding a neonate. Infants over 2 months of age have more mature kidney function and are less likely to be affected.Ophthalmic use of carteolol by the mother should pose little risk to the breastfed infant, although some guidelines state that gel formulations are preferred over solutions.[1,2] substantially diminish the amount of drug that reaches the breastmilk after using eye drops, place pressure over the tear duct by the corner of the eye for 1 minute or more, then remove the excess solution with an absorbent tissue.

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