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PROTAC EED degrader-2 - CAS 2639882-69-0

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PROTAC EED degrader-2, a von Hippel-Lindau-based PROTAC targeting EED (pKD = 9.27), is a polycomb repressive complex 2 (PRC2) inhibitor (pIC50 = 8.11) targeting the EED subunit.

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Molecular Formula

C50H58FN11O6S

Molecular Weight

960.13

PROTAC EED degrader-2

- Specification
  - Purity
    
    ≥98%
    
    Solubility
    
    Soluble in DMSO
    
    Storage
    
    Store at -20°C, protect from light, stored under nitrogen
    
    IUPAC Name
    
    (2S,4R)-1-[(2S)-2-[5-[3-[5-[5-[(5-fluoro-2,3-dihydro-1-benzofuran-4-yl)methylamino]-[1,2,4]triazolo[4,3-c]pyrimidin-8-yl]-6-methylpyridin-2-yl]propanoylamino]pentanoylamino]-3,3-dimethylbutanoyl]-4-hydroxy-N-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]pyrrolidine-2-carboxamide
    
    Synonyms
    
    N-[5-({3-[5-(5-{[(5-Fluoro-2,3-dihydro-1-benzofuran-4-yl)methyl]amino}[1,2,4]triazolo[4,3-c]pyrimidin-8-yl)-6-methyl-2-pyridinyl]propanoyl}amino)pentanoyl]-3-methyl-L-valyl-(4R)-4-hydroxy-N-[4-(4-methyl-1,3-thiazol-5-yl)benzyl]-L-prolinamide; L-Prolinamide, N-[5-[[3-[5-[5-[[(5-fluoro-2,3-dihydro-4-benzofuranyl)methyl]amino]-1,2,4-triazolo[4,3-c]pyrimidin-8-yl]-6-methyl-2-pyridinyl]-1-oxopropyl]amino]-1-oxopentyl]-3-methyl-L-valyl-4-hydroxy-N-[[4-(4-methyl-5-thiazolyl)phenyl]methyl]-, (4R)-
- Properties
  - Density
    
    1.40±0.1 g/cm3
    
    InChI Key
    
    CQSOTYMFUWTIIR-HUSBZTEESA-N
    
    InChI
    
    InChI=1S/C50H58FN11O6S/c1-29-35(38-25-55-49(62-27-57-60-46(38)62)54-24-37-36-19-21-68-41(36)17-16-39(37)51)15-13-33(58-29)14-18-42(64)52-20-7-6-8-43(65)59-45(50(3,4)5)48(67)61-26-34(63)22-40(61)47(66)53-23-31-9-11-32(12-10-31)44-30(2)56-28-69-44/h9-13,15-17,25,27-28,34,40,45,63H,6-8,14,18-24,26H2,1-5H3,(H,52,64)(H,53,66)(H,54,55)(H,59,65)/t34-,40+,45-/m1/s1
    
    Canonical SMILES
    
    CC1=C(C=CC(=N1)CCC(=O)NCCCCC(=O)NC(C(=O)N2CC(CC2C(=O)NCC3=CC=C(C=C3)C4=C(N=CS4)C)O)C(C)(C)C)C5=CN=C(N6C5=NN=C6)NCC7=C(C=CC8=C7CCO8)F
- Reference Reading
  - 1. EED-targeted PROTACs degrade EED, EZH2, and SUZ12 in the PRC2 complex.
    
    Hsu, J.H.R., Rasmusson, T., Robinson, J., Pachl, F., Read, J., Kawatkar, S., O'Donovan, D.H., Bagal, S., Code, E., Rawlins, P. and Argyrou, A., 2020. Cell chemical biology, 27(1), pp.41-46.
    
    Deregulation of the PRC2 complex, comprised of the core subunits EZH2, SUZ12, and EED, drives aberrant hypermethylation of H3K27 and tumorigenicity of many cancers. Although inhibitors of EZH2 have shown promising clinical activity, preclinical data suggest that resistance can be acquired through secondary mutations in EZH2 that abrogate drug target engagement. To address these limitations, we have designed several hetero-bifunctional PROTACs (proteolysis-targeting chimera) to efficiently target EED for elimination. Our PROTACs bind to EED (pKD ~ 9.0) and promote ternary complex formation with the E3 ubiquitin ligase. The PROTACs potently inhibit PRC2 enzyme activity (pIC50 ~ 8.1) and induce rapid degradation of not only EED but also EZH2 and SUZ12 within the PRC2 complex. Furthermore, the PROTACs selectively inhibit proliferation of PRC2-dependent cancer cells (half maximal growth inhibition [GI50] = 49-58 nM). In summary, our data demonstrate a therapeutic modality to target PRC2-dependent cancer through a PROTAC-mediated degradation mechanism.

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