(S,R,S)-AHPC-C6-CO2H hydrochloride is a premium E3 ligase ligand-linker conjugate specifically designed for use in PROTAC (Proteolysis Targeting Chimera) drug development. This compound features an optimized (S,R,S)-AHPC ligand moiety connected via a C6 aliphatic linker to a carboxylic acid handle, enabling facile conjugation to target protein ligands. In the context of PROTAC technology, this molecule serves as a critical building block, recruiting the Von Hippel-Lindau (VHL) E3 ubiquitin ligase to the vicinity of disease-causing proteins, thereby marking them for proteasomal degradation. As a key component in rational PROTAC design, (S,R,S)-AHPC-C6-CO2H hydrochloride accelerates the development of novel targeted protein degraders with applications in oncology, neurodegenerative diseases, and other therapeutically relevant fields. Its versatile linker length and functional handle provide superior flexibility for medicinal chemists and researchers working on next-generation protein degradation therapeutics.
* For research and manufacturing use only. Not for human or clinical use.
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Background Introduction
(S,R,S)-AHPC-C6-CO2H hydrochloride is a chemically synthesized small-molecule ligand-linker conjugate, engineered for the development of highly selective PROTACs (Proteolysis Targeting Chimeras). Derived from AHPC (aryl hydroxyproline carboxamide), this conjugate features a six-carbon (C6) alkyl linker terminated by a carboxylic acid, optimizing it for functionalization and bioorthogonal conjugation. Its unique chirality and structure make it especially suitable for E3 ligase recruiting in targeted protein degradation platforms.
Mechanism
The (S,R,S)-AHPC-C6-CO2H hydrochloride acts as an E3 ligase ligand-linker module, primarily recruiting the von Hippel-Lindau (VHL) E3 ubiquitin ligase. The AHPC moiety binds specifically to VHL, while the flexible C6 linker allows for attachment to target protein ligands via its terminal carboxylic acid. When incorporated into a PROTAC molecule, this conjugate brings the E3 ligase and the protein of interest into close spatial proximity. This induces polyubiquitination of the target protein, marking it for rapid proteasomal degradation and enabling selective removal of disease-relevant proteins at the post-translational level.
Applications
(S,R,S)-AHPC-C6-CO2H hydrochloride is widely utilized in the synthesis of customized PROTACs for research and drug discovery. Its robust design supports the development of degraders against various intracellular targets, particularly those previously considered undruggable by conventional inhibitors. Key application areas include oncology, neurodegenerative disease research, and studies on protein homeostasis. This ligand-linker conjugate also enables SAR (Structure-Activity Relationship) studies, optimization of linker length and flexibility, and expansion of chemical biology toolkits for next-generation targeted protein degradation strategies.
(S,R,S)-AHPC-C6-CO2H hydrochloride is a versatile E3 Ligase Ligand-Linker Conjugate that plays a crucial role in the development of PROTACs for targeted protein degradation. It offers unique characteristics that facilitate efficient degradation of target proteins, enhancing research in protein homeostasis and therapeutic applications. The following provides a detailed description of this molecule's linker, ligand, and selection of target protein ligands.
Linker: The linker in (S,R,S)-AHPC-C6-CO2H hydrochloride is a six-carbon chain that provides moderate flexibility, allowing for optimal spatial arrangement between the ligand and target protein. Its non-cleavable nature ensures stability during the protein degradation process, making it suitable for sustained interactions.
Ligand: The ligand component is based on the AHPC (Aryl Hydrocarbon Receptor-Interacting Protein) scaffold, which is known for its high affinity and specificity for the VHL (von Hippel-Lindau) E3 ligase. This structural feature ensures effective recruitment of the ubiquitin-proteasome system for targeted protein degradation.
Reactive Site: The reactive site of (S,R,S)-AHPC-C6-CO2H hydrochloride is the carboxylic acid group, which is designed to couple with amino groups of the target protein ligand. Recommended reaction types include amide bond formation and esterification, providing versatility in the conjugation process.
Recommended Target Protein Ligand: The ideal warhead for this molecule is an electrophilic moiety capable of forming stable covalent bonds with nucleophilic residues on the target protein. This compatibility enhances the specificity and efficiency of the degradation process, making it suitable for applications in studying protein function and developing therapeutic strategies against diseases associated with protein dysregulation.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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