Thalidomide-linker 5

 CAS No.: 2098487-52-4  Cat No.: BP-100060  Purity: ≥98% 4.5  

Thalidomide-linker 5 is an advanced E3 Ligase Ligand-Linker Conjugate designed for use in PROTAC (Proteolysis Targeting Chimera) drug discovery and development. This conjugate features a thalidomide moiety that targets the cereblon (CRBN) E3 ubiquitin ligase, combined with a customizable linker for easy attachment to target-binding ligands. As a pivotal component in PROTAC synthesis, Thalidomide-linker 5 enables the recruitment of CRBN E3 ligase to specific proteins, promoting their ubiquitination and targeted protein degradation via the ubiquitin-proteasome system. This product is widely used in research aimed at drug target validation, oncology, neurodegenerative disorders, and the exploration of novel therapeutic modalities. Ideal for medicinal chemistry, chemical biology, and pharmaceutical research, Thalidomide-linker 5 supports the development of next-generation protein degraders and the rapid advancement of targeted protein degradation strategies.

Thalidomide-linker 5

Structure of 2098487-52-4

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Category
E3 Ligase Ligand-Linker Conjugate
Molecular Formula
C20H20N2O7
Molecular Weight
400.38

* For research and manufacturing use only. Not for human or clinical use.

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Capabilities & Facilities

  • Comprehensive PROTAC Platform
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  • Custom Synthesis & Design Service
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Purity
≥98%
ShelfLife
2 years
Storage
-20°C
Synonyms
2-(2,6-Dioxo-3-piperidinyl)-4-[2-[2-(2-propyn-1-yloxy)oxy]ethoxy]-1H-isoindole-1,3(2H)dione
InChI Key
XJWGDRINRIEEJD-UHFFFAOYSA-N
InChI
InChI=1S/C20H20N2O7/c1-2-8-27-9-10-28-11-12-29-15-5-3-4-13-17(15)20(26)22(19(13)25)14-6-7-16(23)21-18(14)24/h1,3-5,14H,6-12H2,(H,21,23,24)
Canonical SMILES
C#CCOCCOCCOC1=CC=CC2=C1C(=O)N(C2=O)C3CCC(=O)NC3=O

Background Introduction

Thalidomide-linker 5 is a specialized reagent designed for the development of PROTACs (Proteolysis Targeting Chimeras). This conjugate incorporates a thalidomide-based E3 ligase ligand and an optimized linker, providing a modular foundation for targeted protein degradation research. Thalidomide derivatives selectively recruit the Cereblon (CRBN) E3 ubiquitin ligase complex, making them indispensable tools in chemical biology and drug discovery pipelines.

Mechanism

Thalidomide-linker 5 acts as an E3 ligase ligand-linker conjugate in the construction of heterobifunctional molecules such as PROTACs. The thalidomide moiety binds specifically to the CRBN E3 ligase, while the attached synthetic linker enables conjugation to various target protein ligands. When incorporated into a PROTAC, this conjugate facilitates the proximity-induced ubiquitination and subsequent proteasomal degradation of the target protein. This mechanism leverages the cell’s natural protein quality control system for selective elimination of disease-related proteins.

Applications

Thalidomide-linker 5 is widely utilized in the synthesis of PROTACs for targeted protein degradation studies. It enables medicinal chemists and researchers to streamline the design of CRBN-recruiting PROTACs for preclinical research. Key applications include the identification and validation of novel drug targets, evaluation of protein function in cellular systems, and the development of next-generation therapeutics for cancer, neurodegenerative diseases, and immune disorders. This conjugate is also valuable for screening libraries, SAR studies, and proof-of-concept assays in modern drug discovery.

• Versatile thalidomide-based E3 ligase ligand enables efficient recruitment of CRBN in PROTAC applications.
• Pre-attached linker streamlines PROTAC synthesis, saving valuable development time for drug discovery projects.
1. 5-Hydroxytryptamine-receptor subtypes
O E Brodde Clin Physiol Biochem. 1990;8 Suppl 3:19-27.
5-Hydroxytryptamine (5-HT) receptors were originally subclassified into the subtypes M and D based on the findings that 5-HT contracted the guinea-pig ileum by two different mechanisms: (a) directly by an effect on receptors located on smooth muscles (via D receptors), and (b) indirectly by an effect on neuronal receptors (M receptors), the activation of which caused acetylcholine release. With the introduction of radioligand-binding studies and the development of more selective 5-HT agonists and antagonists, it rapidly became apparent that this subclassification is an oversimplification, and it is now accepted that at least three, possibly four main families of 5-HT receptors exist: 5-HT1, 5-HT2, 5-HT3 and possibly 5-HT4 receptors. Furthermore, 5-HT1 receptors are not a homogeneous class, but are subdivided further into four subtypes: 5-HT1A, 5-HT1B, 5-HT1C and 5-HT1D. Whether 5-HT2 and 5-HT3 receptors are also a heterogeneous class of receptors is still a matter of controversy. Besides the differences in specific agonists and antagonists, 5-HT-receptor subtypes seem to differ also in their signal-transduction mechanisms. 5-HT1 receptors (with the exception of 5-HT1C) are coupled to adenylate cyclase, predominantly in an inhibitory fashion, but 5-HT1-mediated activation of adenylate cyclase has been also described. 5-HT2 receptors (and 5-HT1C) are coupled to PI turnover, while 5-HT3 receptors appear to be coupled directly to fast ion channels. On the other hand, 5-HT4 receptors couple obviously in an excitatory fashion to adenylate cyclase.
2. [The pharmacological basis of the serotonin system: Application to antidepressant response]
D J David, A M Gardier Encephale. 2016 Jun;42(3):255-63.doi: 10.1016/j.encep.2016.03.012.Epub 2016 Apr 23.
If serotonin (5-hydroxytryptamin [5-HT]) is well known for its role in mood regulation, it also impacts numerous physiological functions at periphery. Serotonin is synthetized at the periphery into the gut by intestinal enterochromaffin cells and in the central nervous system (CNS) in the raphe nucleus from the essential amino acid tryptophan. Physiological effects of 5-HT are mediated by about 15 serotoninergic receptors grouped into seven broad families (5-HT1, 5-HT2, 5-HT3, 5-HT4, 5-HT5, 5-HT6, 5-HT7 receptor families). Except 5-HT3 receptor, a ligand-gated ion channels, all the others are G protein-coupled receptors. Serotonin's homeostasis involves serotoninergic autoreceptor such as 5-HT1A, 5-HT1B, 5-HT1D, the enzymatic degradation of serotonin by monoamine oxidase A (MAO-A), and a transporter (serotoninergic transporter [SERT]). In the CNS, the SERT is a key target for various antidepressant drugs such as Selective Serotonin Reuptake Inhibitors (SSRI), Serotonin Norepinephrin Reuptake Inhibitors (SNRI) and tricyclics family. However, antidepressant activity of SERT inhibitors is not directly mediated by the SERT inhibition, but a consequence of postsynaptic 5-HT receptor activation following the increase in 5-HT levels in the synaptic cleft. In pharmacology, SSRIs are defined as indirect agonist of postsynaptic receptor. Among all the 5-HT receptors, 5-HT1A, 5-HT1B, 5-HT1D, 5-HT2B and 5-HT4 receptors activation would mediate antidepressant effects. In the meanwhile, 5-HT2A, 5-HT2C, 5-HT3, 5-HT6 and 5-HT7 receptors activation would induce opposite effects. The best serotoninergic antidepressant would directly activate 5-HT1A, 5-HT1B, 5-HT1D, 5-HT2B and 5-HT4 and would block 5-HT2A, 5-HT2C, 5-HT3, 5-HT6 and 5-HT7 receptor. If the chemical synthesis of such a compound may be compromised, SERT inhibition associated with the blockade of some but not all 5-HT receptor could shorten onset of action and/or improve antidepressant efficacy on the overall symptomatology of depression.
3. 5-methylcytosine and its derivatives
Bi-Feng Yuan Adv Clin Chem. 2014;67:151-87.doi: 10.1016/bs.acc.2014.09.003.Epub 2014 Nov 4.
Epigenetics has undergone an explosion in the past decade. DNA methylation, consisting of the addition of a methyl group at the fifth position of cytosine (5-methylcytosine, 5-mC) in a CpG dinucleotide, is a well-recognized epigenetic mark with important functions in cellular development and pathogenesis. Numerous studies have focused on the characterization of DNA methylation marks associated with disease development as they may serve as useful biomarkers for diagnosis, prognosis, and prediction of response to therapy. Recently, novel cytosine modifications with potential regulatory roles such as 5-hydroxymethylcytosine (5-hmC), 5-formylcytosine (5-foC), and 5-carboxylcytosine (5-caC) have been discovered. Study of the functions of 5-mC and its oxidation derivatives promotes the understanding of the mechanism underlying association of epigenetic modifications with disease biology. In this respect, much has been accomplished in the development of methods for the discovery, detection, and location analysis of 5-mC and its oxidation derivatives. In this review, we focus on the recent advances for the global detection and location study of 5-mC and its oxidation derivatives 5-hmC, 5-foC, and 5-caC.

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It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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