3-[2-(3-Ethoxy-3-oxopropoxy)ethoxy]propionic Acid

 CAS No.: 886362-90-9  Cat No.: BP-501323 4.5  

3-[2-(3-Ethoxy-3-oxopropoxy)ethoxy]propionic Acid is a bifunctional aliphatic linker acid featuring an ether-rich chain with a terminal carboxylic acid and an ester-like, oxopropoxy segment. The extended, flexible polyether character provides conformational mobility and can reduce steric penalties when positioning a warhead-binding ligand and an E3 ligase recruiter within a PROTAC construct. In targeted protein degradation designs, the carboxylate handle enables straightforward conjugation to amine- or hydrazide-bearing partners (or incorporation into amide-forming synthetic routes), while the internal ether/oxopropoxy elements help maintain solubility and can tune the effective distance and orientation required for productive ternary complex formation. As a modular linker component, it is valuable for building degraders where linker length, polarity, and hydrogen-bonding capacity must be optimized to balance binding, cell permeability, and degradation efficiency in experimental PROTAC workflows.

3-[2-(3-Ethoxy-3-oxopropoxy)ethoxy]propionic Acid

Structure of 886362-90-9

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PROTAC Linker
Molecular Formula
C10H18O6
Molecular Weight
234.25

* For research and manufacturing use only. Not for human or clinical use.

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Storage
Pure form, -20°C, 3 years; 4°C, 2 years; In solvent, -80°C, 6 months; -20°C, 1 month
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Room temperature in continental US; may vary elsewhere.
IUPACName
3-[2-(3-ethoxy-3-oxopropoxy)ethoxy]propanoic acid
Synonyms
3-[2-(3-ethoxy-3-oxopropoxy)ethoxy]propanoic acid; 3-[2-(3-ethoxy-3-oxopropoxy)ethoxy]propanoic acid
Boiling Point
370.8 °C at 760 mmHg
Density
1.145 g/cm<sup>3</sup>
InChI Key
KEGUKRRJONEXNN-UHFFFAOYSA-N
InChI
InChI=1S/C10H18O6/c1-2-16-10(13)4-6-15-8-7-14-5-3-9(11)12/h2-8H2,1H3,(H,11,12)
SMILES
CCOC(=O)CCOCCOCCC(=O)O
1. Liquid chromatography-tandem mass spectrometry of a new PPARalpha/gamma dual agonist PAR-5359 in rat plasma
Dong Kyun Kim, Eun Jeong Park, Ji Hyun Jeong, Sun Ho Jeon, Eun Jung Kim, Hyun Joo Shim, Joong In Lim, Hye Suk Lee Arch Pharm Res. 2009 Dec;32(12):1743-8.doi: 10.1007/s12272-009-2212-z.Epub 2010 Feb 17.
PAR-5359, 3-(4-{2-[4-(4-Chloro-phenyl)-3,6-dihydro-2H-pyridin-1-yl]-ethoxy}-phenyl)-2-ethoxypropionic acid, is a well-balanced PPARalpha/gamma dual agonist with the excellent antihyperglycemic and hypolipidemic activities. A reliable, selective and sensitive high-performance liquid chromatography with electrospray ionization tandem mass spectrometry was developed for the determination of PAR-5359 in rat plasma. PAR-5359 was twice extracted from rat plasma using methyl tert-butyl ether at neutral pH. The analytes were separated on an Allure Biphenyl column with the mobile phase of 78% methanol in 10 mM ammonium formate (pH 3.0) and detected by tandem mass spectrometry in the selective reaction monitoring mode. The calibration curve was linear (r = 0.9993) over the concentration range of 2.00-1000.0 ng/mL and the lower limit of quantification was 2.00 ng/mL using 50 microL plasma sample. The coefficient of variation and relative error at four QC levels were 1.2 to 12.3% and -2.5 to 6.3%, respectively. The present method was successfully applied to the pharmacokinetic study of PAR-5359 after oral dose of PAR-5359 at a dose of 1 mg/kg to male SD rats.
2. PAR-5359, a well-balanced PPARalpha/gamma dual agonist, exhibits equivalent antidiabetic and hypolipidemic activities in vitro and in vivo
Mi-Kyung Kim, Yu Na Chae, Moon Ho Son, Soon Hoe Kim, Jin Kwan Kim, Ho Sang Moon, Chan Sun Park, Myung-Ho Bae, Eunkyung Kim, Taedong Han, Hyun-Ho Choi, Young Ah Shin, Byung-Nak Ahn, Chun Ho Lee, Joong In Lim, Chang Yell Shin Eur J Pharmacol. 2008 Oct 24;595(1-3):119-25.doi: 10.1016/j.ejphar.2008.07.066.Epub 2008 Aug 12.
Peroxisome proliferator-activated receptor (PPAR) alpha and gamma are key regulators of lipid homeostasis and insulin resistance. In this study, we characterize the pharmacological profiles of PAR-5359, a dual agonist of PPARalpha and gamma with well-balanced activities. In transient transactivation assay, PAR-5359 (3-(4-(2[4-(4chloro-phenyl)-3,6-dihydro-2H-pyridin-1-yl]-ethoxy)-phenyl)-(2S)-ethoxy-propionic acid) significantly activated human and mouse PPARalpha and gamma without activating PPARdelta. In functional assays using human mesenchymal stem cells and human hepatoma HepG2 cells, PAR-5359 significantly induced adipocyte differentiation and human ApoA1 secretion, which coincided with its transactivation potencies against the corresponding human receptor subtypes. Interestingly, PAR-5359 showed equivalent potencies against the mouse receptor subtypes (alpha and gamma; 2.84 microM and 3.02 microM, respectively), which suggests the possibility that PAR-5359 could simultaneously activates each subtype of receptors subtype in under physiological conditions. In an insulin-resistant ob/ob mouse model, PAR-5359 significantly reduced plasma insulin levels, improved insulin sensitivity (HOMA-IR), and completely normalized plasma glucose levels. In a severe diabetic db/db mouse model, PAR-5359 dose-dependently reduced the plasma levels of glucose (ED(30) = 0.07 mg/kg). Furthermore, it lowered plasma levels of non HDL- (ED(30) = 0.13 mg/kg) and total cholesterol (ED(30) = 0.03 mg/kg) in high cholesterol diet-fed rats for 4 days treatment. These results suggest that PAR-5359 has the balanced activities for PPARalpha and PPARgamma in vivo as well as in vitro. And its balanced activities may render PAR-5359 as a pharmacological tool in elucidating the complex roles of PPARalpha/gamma dual agonists.

3-[2-(3-Ethoxy-3-oxopropoxy)ethoxy]propionic acid, provides a polar, oxygen-rich scaffold that can help connect targeting and recruiting modules while maintaining conformational flexibility. Its ester-like and ether-containing motifs support controlled spatial presentation of functional handles, which is advantageous for building degraders that require precise linker length and solvation behavior. The following sections describe its structure and practical reactivity considerations for PROTAC assembly.

Structure: The linker contains a carboxylic acid group attached to an ether-rich, polyether chain featuring an alkoxy-substituted carbonyl-bearing segment. It incorporates multiple C–O ether bonds and an ester-like carbonyl functionality, yielding a polar, hydrogen-bonding-capable framework with favorable solubility characteristics in common organic media.

Reactivity: The terminal carboxylic acid enables standard PROTAC conjugation strategies via amide or ester formation. Typical coupling relies on acid-activation chemistry using carbodiimide reagents with an auxiliary base, optionally with additives to suppress side reactions. Suitable solvents include polar aprotic media used for peptide coupling, and reactions are generally performed under anhydrous, inert conditions to minimize hydrolysis of activated intermediates.

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