3-[2-(3-Ethoxy-3-oxopropoxy)ethoxy]propionic Acid is a bifunctional aliphatic linker acid featuring an ether-rich chain with a terminal carboxylic acid and an ester-like, oxopropoxy segment. The extended, flexible polyether character provides conformational mobility and can reduce steric penalties when positioning a warhead-binding ligand and an E3 ligase recruiter within a PROTAC construct. In targeted protein degradation designs, the carboxylate handle enables straightforward conjugation to amine- or hydrazide-bearing partners (or incorporation into amide-forming synthetic routes), while the internal ether/oxopropoxy elements help maintain solubility and can tune the effective distance and orientation required for productive ternary complex formation. As a modular linker component, it is valuable for building degraders where linker length, polarity, and hydrogen-bonding capacity must be optimized to balance binding, cell permeability, and degradation efficiency in experimental PROTAC workflows.
Structure of 886362-90-9
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3-[2-(3-Ethoxy-3-oxopropoxy)ethoxy]propionic acid, provides a polar, oxygen-rich scaffold that can help connect targeting and recruiting modules while maintaining conformational flexibility. Its ester-like and ether-containing motifs support controlled spatial presentation of functional handles, which is advantageous for building degraders that require precise linker length and solvation behavior. The following sections describe its structure and practical reactivity considerations for PROTAC assembly.
Structure: The linker contains a carboxylic acid group attached to an ether-rich, polyether chain featuring an alkoxy-substituted carbonyl-bearing segment. It incorporates multiple C–O ether bonds and an ester-like carbonyl functionality, yielding a polar, hydrogen-bonding-capable framework with favorable solubility characteristics in common organic media.
Reactivity: The terminal carboxylic acid enables standard PROTAC conjugation strategies via amide or ester formation. Typical coupling relies on acid-activation chemistry using carbodiimide reagents with an auxiliary base, optionally with additives to suppress side reactions. Suitable solvents include polar aprotic media used for peptide coupling, and reactions are generally performed under anhydrous, inert conditions to minimize hydrolysis of activated intermediates.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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