4,7,10,13,16,19-Hexaoxadocosa-1,21-diyne

 CAS No.: 185378-83-0  Cat No.: BP-500681  Purity: >95% 4.5  

4,7,10,13,16,19-Hexaoxadocosa-1,21-diyne is a polyethylene glycol–like, oxygen-rich diyne linker designed to connect two functional termini through terminal alkyne handles. Its extended chain contains multiple ether oxygen atoms that increase conformational flexibility and tune polarity, while the diyne motif provides a chemically robust, linear linkage suitable for orthogonal coupling strategies commonly used in PROTAC synthesis. In targeted protein degradation workflows, such linkers help position the two recruited ligands (e.g., an E3 ligase binder and a target-binding moiety) at an appropriate spatial distance and orientation to promote formation of a productive ternary complex. The ether-rich backbone can also modulate solubility and reduce nonspecific hydrophobic interactions, which are frequent challenges in linker optimization. As a modular building block, it supports systematic structure–activity studies by enabling controlled variation of linker length, rigidity, and polarity in degradation constructs.

4,7,10,13,16,19-Hexaoxadocosa-1,21-diyne

Structure of 185378-83-0

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Category
PROTAC Linker
Molecular Formula
C16H26O6
Molecular Weight
314.37
Appearance
Pale Yellow Oily Liquid

* For research and manufacturing use only. Not for human or clinical use.

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Popular Publications Citing BOC Sciences Products
Purity
>95%
Solubility
Soluble in DCM, DMF, DMSO
Appearance
Pale Yellow Oily Liquid
Storage
Store at 2-8°C
Shipping
Room temperature in continental US; may vary elsewhere.
IUPACName
3-[2-[2-[2-[2-(2-prop-2-ynoxyethoxy)ethoxy]ethoxy]ethoxy]ethoxy]prop-1-yne
Synonyms
Alkyne-PEG6-Alkyne; Propargyl-PEG6-Propargyl; Bis-propargyl-PEG6
Boiling Point
381.7±37.0°C at 760 mmHg
Density
1.1±0.1 g/cm3
InChI Key
UDOWAMKIEUIBMU-UHFFFAOYSA-N
InChI
InChI=1S/C16H26O6/c1-3-5-17-7-9-19-11-13-21-15-16-22-14-12-20-10-8-18-6-4-2/h1-2H,5-16H2
SMILES
C#CCOCCOCCOCCOCCOCCOCC#C
1. catena-Poly[[bis-(μ(2)-1,4,7,10,13,16-hexa-oxacyclo-octa-deca-ne)dipotassium]-μ(2)-iodido-(iodidocadmium)-di-μ(2)-iodido-(iodidocadmium)-μ(2)-iodido]
K Rajarajan, A Pugazhenthi, M Nizammohideen Acta Crystallogr Sect E Struct Rep Online. 2013 Feb 1;69(Pt 2):m125.doi: 10.1107/S1600536813002274.Epub 2013 Jan 31.
The reaction of CdCl(2), 18-crown-6 and KI in water yields the title coordination polymer, [{K(C(12)H(24)O(6))}(2)Cd(2)I(6)](n). The potassium ion lies approximately in the plane of the crown ether, coordinated by all six crown ether O atoms and also by an iodide anion bound to a cadmium atom. A C atom of the crown ether is disordered over two positions with site occupancies of 0.77 (2) and 0.23 (2). Two K(18-crown-6)(+) units are linked by inversion symmetry, forming a [bis-(μ(2)-18-crown-6)dipottasium] system with approximately square-planar K(2)O(2) units. Inversion symmetry also generates the Cd(2)I(6) fragment and the polymeric system is extended along the c axis by the formation of K-I-Cd bridges.
2. Regulation of the biosynthesis of 4,7,10,13,16-docosapentaenoic acid
B S Mohammed , D L Luthria, S P Bakousheva, H Sprecher Biochem J. 1997 Sep 1;326 ( Pt 2)(Pt 2):425-30.doi: 10.1042/bj3260425.
It is now established that fatty acid 7,10,13,16-22:4 is metabolized into 4,7,10,13,16-22:5 as follows: 7,10,13,16-22:4-->9,12,15, 18-24:4-->6,9,12,15,18-24:5-->4,7,10,13,16-22:5. Neither C24 fatty acid was esterified to 1-acyl-sn-glycero-3-phosphocholine (1-acyl-GPC) by microsomes, whereas the rates of esterification of 4, 7,10,13,16-22:5, 7,10,13,16-22:4 and 5,8,11,14-20:4 were respectively 135, 18 and 160 nmol/min per mg of microsomal protein. About four times as much acid-soluble radioactivity was produced when peroxisomes were incubated with [3-14C]9,12,15,18-24:4 compared with 6,9,12,15,18-24:5. Only [1-14C]7,10,13,16-22:4 accumulated when [3-14C]9,12,15,18-24:4 was the substrate, but both 4,7,10,13,16-22:5 and 2-trans-4,7,10,13,16-22:6 were produced from [3-14C]6,9,12,15, 18-24:5. When the two C24 fatty acids were incubated with peroxisomes, microsomes and 1-acyl-GPC there was a decrease in the production of acid-soluble radioactivity from [3-14C]6,9,12,15, 18-24:5, but not from [3-14C]9,12,15,18-24:4. The preferential fate of [1-14C]4,7,10,13,16-22:5, when it was produced, was to move out of peroxisomes for esterification into the acceptor, whereas only small amounts of 7,10,13,16-22:4 were esterified. By using 2H-labelled 9,12,15,18-24:4 it was shown that, when 7,10,13,16-22:4 was produced, its primary metabolic fate was degradation to yield esterified arachidonate. Collectively, the results show that an inverse relationship exists between rates of peroxisomal beta-oxidation and of esterification into 1-acyl-GPC by microsomes. Most importantly, when a fatty acid is produced with its first double bond at position 4, it preferentially moves out of peroxisomes for esterification to 1-acyl-GPC by microsomes, rather than being degraded further via a cycle of beta-oxidation that requires NADPH-dependent 2,4-dienoyl-CoA reductase.
3. catena-Poly[[trans-dichlorocopper(II)-mu-1,4,7,10,13,16-hexathiacyclooctadecane-S1:S10]
A J Blake, V Lippolis, S Parsons, M Schröder Acta Crystallogr C. 2001 Jan;57(Pt 1):36-7.doi: 10.1107/s0108270100014475.
In the title complex, [CuCl2(C12H24S6)]n, the CuCl2 unit and the ligand lie on and about inversion centres, respectively. The coordination geometry at CuII is a tetragonally elongated octahedron with the equatorial positions occupied by two chlorides, Cu-Cl 2.2786 (12) A, and two S donors, Cu-S 2.3710 (13) A. The apical positions of the octahedron are defined by two S donors at distances of 2.8261 (14) A from the metal. The macrocyclic ligand adopts a very puckered and distorted conformation. Eight of the 18 torsion angles are less than 90 degrees and all S-donors are oriented exo to the ring.

4,7,10,13,16,19-Hexaoxadocosa-1,21-diyne is a homobifunctional polyether linker bearing a terminal propargyl group at each end. Its ether-rich chain provides a flexible, polar spacer between conjugated components, while the two terminal alkynes support sequential or symmetrical coupling strategies. This architecture can be used to construct linker-containing conjugates, including PROTAC intermediates, when two azide-reactive termini are required.

Structure: The molecule consists of an extended polyether chain terminated by two spatially separated propargyl groups. The two carbon–carbon triple bonds are located at opposite ends of the molecule and are not conjugated with each other. Ether linkages within the central chain provide conformational flexibility and polarity; therefore, the linker should not be described as a rigid or electronically delocalized diyne scaffold.

Reactivity: Each terminal alkyne can react with an azide-functionalized partner through copper(I)-catalyzed azide–alkyne cycloaddition (CuAAC), producing a stable triazole linkage. The two equivalent alkyne termini allow either double functionalization with the same azide-bearing component or sequential coupling with different components. For unsymmetrical products, stoichiometry, reaction sequence, and intermediate purification should be controlled to limit mixtures of unreacted, mono-substituted, and disubstituted species.

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Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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