Acid-PEG2-t-butyl ester
Acid-PEG2-t-butyl ester is a short, polyethylene glycol–based linker reagent featuring a free terminal carboxylic acid at one end and a tert-butyl ester-protected carboxyl group at the other, enabling controlled handling and subsequent deprotection of the protected acid for PROTAC conjugation. Structurally, it provides a two–ethylene glycol unit spacer that imparts hydrophilicity and conformational flexibility, while the tert-butyl ester functions as a protecting group that improves stability during linker installation and purification. In PROTAC design, the liberated carboxylate can be used to form amide or related linkages to connect an E3 ligase ligand and a target-binding moiety, thereby tuning the effective distance and relative orientation required for productive ternary complex formation. This small, chemically tractable PEG spacer is valuable for optimizing solubility, reducing nonspecific hydrophobic interactions, and improving the robustness of linker synthesis in targeted protein degradation workflows.
Structure of 2086688-99-3
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* For research and manufacturing use only. Not for human or clinical use.
| Size | Price | Stock | Quantity |
|---|---|---|---|
| -- | $-- | In stock |
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| ConcentrationVolumeMass | 1 mg | 5 mg | 10 mg |
|---|---|---|---|
| 1 mM | 3.8124 mL | 19.0621 mL | 38.1243 mL |
| 5 mM | 0.7625 mL | 3.8124 mL | 7.6249 mL |
| 10 mM | 0.3812 mL | 1.9062 mL | 3.8124 mL |
Acid-PEG2-t-butyl ester is a PEG-based PROTAC linker building block designed to provide hydrophilicity, conformational flexibility, and a chemically addressable carboxylic acid handle for assembling targeted protein degradation constructs. Its t-butyl ester functionality enables controlled protection/deprotection strategies that are commonly leveraged to improve synthetic efficiency and to tune coupling compatibility during PROTAC synthesis. The detailed structural and reactivity considerations are provided below.
Structure: The molecule contains a short polyethylene glycol segment linked to a carboxylate protected as a tert-butyl ester. It features ether linkages within the PEG chain and an ester linkage at the acid terminus, offering increased polarity and flexibility while maintaining a stable, nonionic scaffold for stepwise synthesis.
Reactivity: The t-butyl ester is suitable for acid-mediated deprotection to generate the corresponding carboxylic acid for subsequent amide or ester coupling to targeting ligands. Typical approaches employ mild organic acids in appropriate solvents to trigger ester cleavage, followed by standard coupling chemistry (e.g., carbodiimide-based activation) under conditions compatible with PROTAC linkers. The PEG ether chain generally remains stable under these transformations.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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