AcS-PEG2-t-butyl ester is a specialized PEG-based PROTAC linker reagent featuring a short polyethylene glycol chain terminated with an acetylthio (AcS) handle and a tert-butyl ester protecting group. Structurally, the PEG2 segment provides aqueous solubility and conformational flexibility, while the AcS moiety enables installation of thioether-linked connection points under standard thiol–thioester or thioacetate chemistry used in linker functionalization workflows. The tert-butyl ester serves as a chemically labile carboxylate equivalent that can be deprotected or transformed to a reactive acid for subsequent amide/ester coupling to targeting ligands or E3-recruiting modules. In PROTAC design, such linkers help tune the spatial arrangement between the target-binding warhead and the degradation-recruiting ligand, improving productive ternary complex formation and degradation efficiency. This reagent is valuable for constructing modular, water-compatible conjugates for systematic structure–activity relationship studies in targeted protein degradation research.
Structure of 1820641-93-7
* For research and manufacturing use only. Not for human or clinical use.
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AcS-PEG2-t-butyl ester is a PEG-based PROTAC linker designed to provide controlled spacing, aqueous compatibility, and a chemically addressable ester handle for late-stage conjugation. Its ether-rich scaffold supports favorable solubility and flexibility in bifunctional degraders, while the protected ester functionality enables selective coupling strategies during PROTAC assembly. The subsequent sections describe the structural attributes and practical reactivity considerations for constructing targeted protein degradation molecules.
Structure: The linker comprises a short polyethylene glycol segment terminated by a tert-butyl ester, incorporating an ether-rich backbone that confers flexibility and enhanced hydrophilicity. Key functional groups include an ester linkage and ether oxygen atoms, with stable carbon–oxygen connectivity suitable for controlled activation under mild deprotection conditions.
Reactivity: The tert-butyl ester is suitable for acid-mediated deprotection to reveal a carboxylic acid for subsequent amide or ester-forming couplings commonly used in PROTAC synthesis. Deprotection typically employs organic acids under controlled conditions, followed by activation of the resulting acid using standard peptide-coupling reagents and compatible bases in polar aprotic solvents. Mechanistically, ester cleavage generates the reactive acid intermediate without disrupting the PEG ether scaffold.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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