Azido-PEG5-succinimidyl carbonate
Azido-PEG5-succinimidyl carbonate is a heterobifunctional PEG-based linker that combines an azide handle with an activated N-hydroxysuccinimide (NHS) carbonate for stable conjugation. Structurally, it features a short polyethylene glycol chain of intermediate length that provides aqueous solubility and reduces steric interference, while the succinimidyl carbonate enables efficient coupling to primary amines on targeting ligands (e.g., lysine-containing peptides or amine-functionalized small molecules) to form a carbamate linkage. The terminal azide group serves as a versatile bioorthogonal “click” handle, allowing subsequent attachment to azide-reactive partners such as alkyne-bearing PROTAC modules or reporter/affinity tags via copper-catalyzed or strain-promoted azide–alkyne cycloaddition. In PROTAC design, this linker supports modular assembly by orthogonally connecting the targeting moiety to other degradation components under mild conditions, facilitating systematic structure–activity studies, optimizing conjugate spacing, and improving synthesis reproducibility for targeted protein degradation research.
Structure of 1402411-88-4
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* For research and manufacturing use only. Not for human or clinical use.
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Azido-PEG5-succinimidyl carbonate is a bifunctional PROTAC linker designed to connect a primary-amine targeting ligand to an azide-bearing partner for subsequent conjugation. Its PEG-based spacer promotes solubility and conformational flexibility, while the succinimidyl carbonate enables efficient carbamate formation with primary amines under mild conditions. These features make it well suited for assembling targeted protein degradation constructs, where modular, stepwise coupling strategies are advantageous; detailed structural and reactivity guidance follows below.
Structure: The linker contains a polyethylene glycol spacer, a succinimidyl carbonate leaving group, and a terminal azide functionality. It features an activated carbonate and an azide handle, with ether linkages within the PEG segment that enhance hydrophilicity and flexibility. The azide provides a stable handle for bioorthogonal conjugation.
Reactivity: The succinimidyl carbonate reacts with primary amines to form stable carbamate-linked conjugates via nucleophilic substitution at the activated carbonate, typically performed in buffered aqueous or mixed solvent systems. The azide group remains compatible with many coupling steps and can later participate in strain-promoted or copper-catalyzed azide–alkyne cycloaddition. Mild bases and controlled temperature are commonly used to preserve functional group integrity.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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