Azido-PEG5-succinimidyl carbonate

 CAS No.: 1402411-88-4  Cat No.: BP-501636  Purity: 98% 4.5  

Azido-PEG5-succinimidyl carbonate is a heterobifunctional PEG-based linker that combines an azide handle with an activated N-hydroxysuccinimide (NHS) carbonate for stable conjugation. Structurally, it features a short polyethylene glycol chain of intermediate length that provides aqueous solubility and reduces steric interference, while the succinimidyl carbonate enables efficient coupling to primary amines on targeting ligands (e.g., lysine-containing peptides or amine-functionalized small molecules) to form a carbamate linkage. The terminal azide group serves as a versatile bioorthogonal “click” handle, allowing subsequent attachment to azide-reactive partners such as alkyne-bearing PROTAC modules or reporter/affinity tags via copper-catalyzed or strain-promoted azide–alkyne cycloaddition. In PROTAC design, this linker supports modular assembly by orthogonally connecting the targeting moiety to other degradation components under mild conditions, facilitating systematic structure–activity studies, optimizing conjugate spacing, and improving synthesis reproducibility for targeted protein degradation research.

Azido-PEG5-succinimidyl carbonate

Structure of 1402411-88-4

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PROTAC Linker
Molecular Formula
C₁₇H₂₈N₄O₁₀
Molecular Weight
448.43

* For research and manufacturing use only. Not for human or clinical use.

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Purity
98%
Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
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Room temperature in continental US; may vary elsewhere.
IUPACName
2-[2-[2-[2-[2-(2-azidoethoxy)ethoxy]ethoxy]ethoxy]ethoxy]ethyl (2,5-dioxopyrrolidin-1-yl) carbonate
Synonyms
2-[2-[2-[2-[2-(2-azidoethoxy)ethoxy]ethoxy]ethoxy]ethoxy]ethyl (2,5-dioxopyrrolidin-1-yl) carbonate; 1-[(19-azido-2,5,8,11,14,17-hexaoxanonadecanoyl)oxy]pyrrolidine-2,5-dione
InChI Key
RDPYDXXYIRLZAG-UHFFFAOYSA-N
InChI
InChI=1S/C17H28N4O10/c18-20-19-3-4-25-5-6-26-7-8-27-9-10-28-11-12-29-13-14-30-17(24)31-21-15(22)1-2-16(21)23/h1-14H2
SMILES
C1CC(=O)N(C1=O)OC(=O)OCCOCCOCCOCCOCCOCCN=[N+]=[N-]
1. Oxygen isotope fractionation in double carbonates
Yong-Fei Zheng, Michael E Böttcher Isotopes Environ Health Stud. 2016;52(1-2):29-46.doi: 10.1080/10256016.2014.977278.Epub 2014 Nov 13.
Oxygen isotope fractionations in double carbonates of different crystal structures were calculated by the increment method. Synthesis experiments were performed at 60 °C and 100 °C to determine oxygen and carbon isotope fractionations involving PbMg[CO3]2. The calculations suggest that the double carbonates of calcite structure are systematically enriched in (18)O relative to those of aragonite and mixture structures. Internally consistent oxygen isotope fractionation factors are obtained for these minerals with respect to quartz, calcite and water at a temperature range of 0-1200 °C. The calculated fractionation factors for double carbonate-water systems are generally consistent with the data available from laboratory experiments. The experimentally determined fractionation factors for PbMg[CO3]2, BaMg[CO3]2 and CaMg[CO3]2 against H2O not only fall between fractionation factors involving pure carbonate end-members but are also close to the calculated fractionation factors. In contrast, experimentally determined carbon isotope fractionation factors between PbMg[CO3]2 and CO2 are much closer to theoretical predictions for the cerussite-CO2 system than for the magnesite-CO2 system, similar to the fractionation behavior for BaMg[CO3]2. Therefore, the combined theoretical and experimental results provide insights into the effects of crystal structure and exchange kinetics on oxygen isotope partitioning in double carbonates.

Azido-PEG5-succinimidyl carbonate is a bifunctional PROTAC linker designed to connect a primary-amine targeting ligand to an azide-bearing partner for subsequent conjugation. Its PEG-based spacer promotes solubility and conformational flexibility, while the succinimidyl carbonate enables efficient carbamate formation with primary amines under mild conditions. These features make it well suited for assembling targeted protein degradation constructs, where modular, stepwise coupling strategies are advantageous; detailed structural and reactivity guidance follows below.

Structure: The linker contains a polyethylene glycol spacer, a succinimidyl carbonate leaving group, and a terminal azide functionality. It features an activated carbonate and an azide handle, with ether linkages within the PEG segment that enhance hydrophilicity and flexibility. The azide provides a stable handle for bioorthogonal conjugation.

Reactivity: The succinimidyl carbonate reacts with primary amines to form stable carbamate-linked conjugates via nucleophilic substitution at the activated carbonate, typically performed in buffered aqueous or mixed solvent systems. The azide group remains compatible with many coupling steps and can later participate in strain-promoted or copper-catalyzed azide–alkyne cycloaddition. Mild bases and controlled temperature are commonly used to preserve functional group integrity.

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Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O √ c22h30n40 ╳
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