Bis-(m-PEG4)-amidohexanoic acid is a lysine-derived, mPEG-substituted monoacid linker. Structurally, it contains a central hexanoic acid framework bearing two amide-linked methoxy-PEG4 substituents and one free carboxylic acid. The methoxy PEG termini are capped and nonreactive, whereas the central carboxylic acid can be activated for amide coupling with an amine-bearing ligand or converted into an ester with an alcohol. In PROTAC and related targeted protein degradation research, the two mPEG arms can increase polarity and steric shielding while the single acid provides the defined covalent attachment site. Its defined architecture allows researchers to evaluate how linker polarity, flexibility, attachment sequence, and terminal-group selection influence conjugate preparation and the spatial requirements of productive target–E3 ligase engagement. Clear assignment of the protected and reactive groups also supports reproducible reaction planning and systematic comparison of alternative linker designs in research-focused targeted protein degradation workflows.
Structure of 2353409-74-0
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Bis-(m-PEG4)-amidohexanoic acid is a PEG-based linker designed to support flexible, water-compatible conjugation in targeted protein degradation (PROTAC) workflows. Its hydrophilic poly(ethylene glycol) character can help tune linker solubility and conformational freedom between a ligand and an E3-recruiting module, supporting productive ternary complex formation. The structure and reactivity considerations for constructing PROTACs using this linker are described in detail below.
Structure: This linker contains a central amide-bearing hexanoic acid framework connected to bis–m-PEG4 substituents. It features multiple ether linkages characteristic of PEG segments, plus amide and carboxylic acid functional groups. The resulting architecture provides pronounced hydrophilicity, conformational flexibility, and stable covalent attachment points for PROTAC assembly.
Reactivity: The carboxylic acid and amide functionalities enable standard peptide-coupling strategies to form PROTAC conjugates, typically via activation of the acid followed by nucleophilic substitution with an appropriately functionalized ligand. Common approaches employ carbodiimide or uronium-type coupling reagents in compatible polar solvents under controlled pH to minimize PEG degradation. Reaction conditions should preserve ester/ether integrity and maintain linker solubility for reproducible coupling efficiency.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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