Dodecaethylene glycol
Dodecaethylene glycol is a poly(ethylene glycol) linker characterized by a long, flexible ethylene glycol chain that provides an extended, solvated spacer between functional groups. Structurally, it consists of repeating ether units that confer hydrophilicity, conformational mobility, and resistance to nonspecific aggregation, enabling controlled separation of adjacent binding motifs in larger constructs. In PROTAC design, such a PEG-like linker is commonly used to mediate productive spatial alignment between an E3 ligase-recruiting ligand and a target-binding moiety, reducing steric clashes and helping maintain the geometry required for ternary complex formation. Its ether-rich backbone can also modulate local polarity and solvation, which often improves the overall physicochemical behavior of conjugates during synthesis and biological testing. As a research tool, dodecaethylene glycol supports systematic linker-length and flexibility studies, facilitating optimization of targeted protein degradation potency and selectivity by tuning inter-domain distance and dynamics.
Structure of 6790-09-6
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Dodecaethylene glycol is a polyethylene glycol-based linker material commonly employed in PROTAC architectures to provide a flexible, hydrophilic spacer between ligand modules. Its ether-rich backbone supports conformational adaptability and can improve solubility and biophysical compatibility of conjugates. The subsequent sections describe the structural motifs and practical considerations for incorporating this linker into targeted protein degradation constructs.
Structure: Dodecaethylene glycol consists of repeating ethylene glycol units connected through ether linkages, forming a flexible, hydrophilic polyether chain. The molecule is characterized by multiple oxygen atoms capable of hydrogen-bonding and strong solvation, with a nonionic, ether-dominated connectivity that supports conformational mobility.
Reactivity: For PROTAC synthesis, this linker is typically used as a polyether spacer that can be functionalized at terminal positions to enable coupling to ligands. Suitable strategies include nucleophilic substitution or ester/amide-forming reactions depending on the terminal functional groups installed on the linker. Commonly used conditions involve mild base or coupling reagents, with polar aprotic solvents to maintain solubility and promote efficient bond formation, while minimizing side reactions to ether linkages.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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