BDP FL-PEG4-amine is a fluorescently labeled, amine-terminated polyethylene glycol (PEG) linker designed for constructing PROTACs and other targeted protein degraders. The molecule combines a BDP-type fluorophore with a short PEG chain of four ethylene glycol units, providing both chemical handle and solubility while maintaining a flexible, hydrophilic spacer between conjugated partners. The terminal primary amine enables straightforward coupling to activated carboxylic acids, NHS-esters, or other electrophiles used to attach ligands that recruit an E3 ligase or a target protein. In PROTAC workflows, this linker architecture helps tune spatial separation and conformational freedom, which can strongly influence ternary complex formation and degradation efficiency. Its fluorescence further supports experimental monitoring of conjugation, localization, and uptake in cellular assays, facilitating optimization of linker length and attachment chemistry for targeted degradation research.
Structure of 2183473-14-3
* For research and manufacturing use only. Not for human or clinical use.
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BDP FL-PEG4-amine is a polyethylene glycol–based PROTAC linker building block designed to connect targeting ligands and E3 ligase recruiters through a terminal amine handle. Its flexible, hydrophilic PEG architecture helps tune linker length, solubility, and conformational freedom, which are key determinants of productive ternary complex formation. This molecule is well suited for constructing PROTACs via amide or urea-forming conjugation strategies; the
Structure: The linker comprises a PEG chain terminated by a primary amine, providing multiple ether oxygen atoms that confer strong hydrogen-bonding capacity and enhanced aqueous compatibility. Its structure features ether linkages along a flexible polyether backbone, with a reactive terminal amine suitable for derivatization.
Reactivity: The terminal primary amine enables nucleophilic coupling to activated carboxylic acids or carboxyl derivatives commonly used in PROTAC synthesis. Typical approaches include amide bond formation using carbodiimide/active ester chemistry or conversion of acids to activated intermediates, followed by coupling under mildly basic conditions. Solvents such as polar aprotic media are frequently employed, and inert atmosphere is advisable when using moisture-sensitive activators.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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