N-(Amino-PEG4)-N-Biotin-PEG4-acid
N-(Amino-PEG4)-N-Biotin-PEG4-acid is a heterobifunctional PEG-based linker featuring two PEG4 segments that connect a terminal biotin moiety to a terminal carboxylic acid, with an amino-functionalized junction suitable for conjugation chemistry. Structurally, the flexible poly(ethylene glycol) chains provide hydrophilicity and conformational mobility, helping minimize steric interference between the biotin tag and the reactive end group. In PROTAC and targeted protein degradation workflows, this linker can be used to introduce a biotin handle for affinity-based capture, detection, or controlled immobilization of PROTAC assemblies, while the carboxylic acid enables coupling to complementary amine-bearing ligands or attachment to other scaffold elements through standard amide-forming strategies. Its PEG architecture supports aqueous solubility and can improve functional presentation of bulky targeting and E3-recruiting components, making it valuable for assembling, characterizing, and optimizing targeted degradation constructs in vitro.
Structure of 2100306-84-9
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This PROTAC linker, N-(Amino-PEG4)-N-Biotin-PEG4-acid, provides a biotin-functionalized, polyethylene glycol–based spacer architecture that supports flexible conjugation and efficient spatial presentation of binding motifs. Its hydrophilic PEG segments help reduce nonspecific interactions and improve solubility in typical PROTAC assembly workflows. The amino functionality enables robust coupling to target-binding ligands, while the biotin handle can be used for affinity-based handling or modular construct design. Detailed structural and reaction considerations are provided below.
Structure: The linker comprises two polyethylene glycol segments flanking a central amine, terminating in a biotin-derived moiety and a carboxylic acid. It contains ether linkages characteristic of PEG, an amide-forming amino group, and a terminal carboxyl group for activation. The overall structure is highly polar and conformationally flexible.
Reactivity: The carboxylic acid is suitable for standard PROTAC linker coupling via activation to reactive intermediates such as active esters or acid chlorides, followed by nucleophilic amide bond formation with amine-bearing ligands. Typical coupling employs coupling reagents and base in polar organic solvents, with mild conditions to preserve sensitive functional groups. The PEG-rich backbone generally tolerates common esterification and amidation chemistries while maintaining aqueous compatibility for subsequent purification and conjugation steps.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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