N-(Azido-PEG3)-NH-PEG3-acid
N-(Azido-PEG3)-NH-PEG3-acid is a heterobifunctional polyethylene glycol (PEG) linker bearing a terminal azide group and a carboxylic acid, with an internal secondary amine connecting the two PEG segments. Structurally, it comprises two short PEG3 segments connected through a secondary amine, yielding a flexible, hydrophilic spacer that can reduce steric interference between PROTAC modules. In targeted protein degradation workflows, the azide handle enables bioorthogonal conjugation via azide–alkyne cycloaddition (CuAAC or strain-promoted variants), allowing researchers to connect the linker to an alkyne-functional ligand or warhead-bearing component. The carboxylic acid facilitates further coupling chemistry (e.g., amide formation) to introduce the linker into synthetic PROTAC architectures. This product is valuable for modular PROTAC design because it supports controlled spatial separation and efficient assembly of conjugates, improving the practical synthesis and optimization of degradation constructs.
Structure of 2183440-72-2
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* For research and manufacturing use only. Not for human or clinical use.
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This N-(Azido-PEG3)-NH-PEG3-acid linker is designed for modular PROTAC assembly, combining azide-enabled bioorthogonal conjugation with polyethylene glycol (PEG) spacer segments that improve solubility and conformational flexibility. Its bifunctional architecture supports reliable attachment of targeting ligands and enables downstream coupling strategies commonly used in targeted protein degradation workflows. The points below describe its structure and practical reactivity considerations in detail.
Structure: The linker contains an azide functional group and two PEG3-derived ether-rich segments connected through amide and terminal carboxylic acid functionality. It features stable C–N and C–O bonds typical of PEG chains, with an azide moiety suitable for click-type transformations and a carboxylic acid for acyl coupling chemistry.
Reactivity: The azide group is compatible with copper-catalyzed azide–alkyne cycloaddition or strain-promoted azide–alkyne reactions, enabling efficient conjugation to alkyne-bearing PROTAC fragments under standard bioorthogonal conditions. The terminal carboxylic acid can be activated for amide-bond formation using common coupling reagents and bases, proceeding via acyl activation followed by nucleophilic substitution. Solvent choice typically favors compatibility with PEG solubility and the selected activation/click protocol.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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