N-Biotin-N-bis(PEG4-acid)

 CAS No.: 1964503-35-2  Cat No.: BP-501010 4.5  

N-Biotin-N-bis(PEG4-acid) is a biotin-functionalized, bis-PEG linker bearing terminal carboxylic acid groups, providing a flexible, hydrophilic tether for conjugation chemistry. Structurally, it combines the high-affinity biotin–(strept)avidin binding handle with two polyethylene glycol chains that terminate in acids, enabling attachment to amine- or activated-carboxylate-bearing partners through standard coupling strategies. In PROTAC and targeted degradation workflows, such linkers are valuable for mediating controlled spatial separation and solubility between ligand modules (e.g., a target-binding moiety and an E3 ligase recruiter) while also offering an orthogonal biotin handle for affinity capture, surface immobilization, or analytical pull-down assays. The dual acidic termini support robust, reproducible linker–payload conjugation and can reduce nonspecific aggregation, improving handling and assay performance. Overall, it is a practical building block for constructing and characterizing multicomponent targeted degradation reagents and for facilitating downstream biochemical validation.

N-Biotin-N-bis(PEG4-acid)

Structure of 1964503-35-2

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PROTAC Linker
Molecular Formula
C₃₂H₅₇N₃O₁₄S
Molecular Weight
739.87

* For research and manufacturing use only. Not for human or clinical use.

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IUPACName
3-[2-[2-[2-[2-[5-[(3aR,4R,6aS)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoyl-[2-[2-[2-[2-(2-carboxyethoxy)ethoxy]ethoxy]ethoxy]ethyl]amino]ethoxy]ethoxy]ethoxy]ethoxy]propanoic acid
InChI Key
PBACTYCVXZZFPD-MMXANPLTSA-N
InChI
InChI=1S/C32H57N3O14S/c36-28(4-2-1-3-27-31-26(25-50-27)33-32(41)34-31)35(7-11-44-15-19-48-23-21-46-17-13-42-9-5-29(37)38)8-12-45-16-20-49-24-22-47-18-14-43-10-6-30(39)40/h26-27,31H,1-25H2,(H,37,38)(H,39,40)(H2,33,34,41)/t26-,27-,31-/m1/s1
SMILES
C1C2C(C(S1)CCCCC(=O)N(CCOCCOCCOCCOCCC(=O)O)CCOCCOCCOCCOCCC(=O)O)NC(=O)N2
1. Comparative evaluation of Bis(thiosemicarbazone)- Biotin and Met-ac-TE3A for tumor imaging
Sweta Singh, Anjani K Tiwari, Raunak Varshney, R Mathur, Gauri Shukla, N Bag, B Singh, Anil K Mishra Comparative StudySpectrochim Acta A Mol Biomol Spectrosc. 2016 Jan 15;153:566-71.doi: 10.1016/j.saa.2015.08.054.Epub 2015 Sep 4.
2,2',2″-(11-(2-((4-mercapto-1-methoxy-1-oxobutan-2-yl)amino)-2-oxoethyl)-1,4,8,11-tetraaza cyclotetradecane-1,4,8-triyl)triacetic acid, Met-ac-TE3A and (E)-N-methyl-2-((E)-3-(2-(2-(5-((3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanoyl)hydrazinecarbono-thioyl)hydrazonobutan-2-ylidene)hydrazinecarbothioamide, Bis(thiosemicarbazone)- Biotin were synthesized and evaluated for imaging application. The pharmacokinetics of these ligands were determined by tracer methods. In vitro human serum stability of (99m)Tc Met-ac-TE3A/(99m)Tc Bis(thiosemicarbazone)-Biotin after 24h was found to be 96.5% and 97.0% respectively. Blood kinetics of both ligands in normal rabbits showed biphasic clearance pattern. Ex vivo biodistribution study revealed significant initial tumor uptake and high tumor/muscles ratio which is a pre-requisite condition for a ligand to work as SPECT-radiopharmaceutical for tumor imaging.
2. Chiral one- and two-dimensional silver(I)-biotin coordination polymers
Muhammad Altaf, Helen Stoeckli-Evans Acta Crystallogr C. 2013 Feb;69(Pt 2):127-37.doi: 10.1107/S0108270113000322.Epub 2013 Jan 22.
Reaction of biotin {C(10)H(16)N(2)O(3)S, HL; systematic name: 5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoic acid} with silver acetate and a few drops of aqueous ammonia leads to the deprotonation of the carboxylic acid group and the formation of a neutral chiral two-dimensional polymer network, poly[[{μ(3)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoato}silver(I)] trihydrate], {[Ag(C(10)H(15)N(2)O(3)S)]·3H(2)O}(n) or {[Ag(L)]·3H(2)O}(n), (I). Here, the Ag(I) cations are pentacoordinate, coordinated by four biotin anions via two S atoms and a ureido O atom, and by two carboxylate O atoms of the same molecule. The reaction of biotin with silver salts of potentially coordinating anions, viz. nitrate and perchlorate, leads to the formation of the chiral one-dimensional coordination polymers catena-poly[[bis[nitratosilver(I)]-bis{μ(3)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoato}] monohydrate], {[Ag(2)(NO(3))(2)(C(10)H(16)N(2)O(3)S)(2)]·H(2)O}(n) or {[Ag(2)(NO(3))(2)(HL)(2)]·H(2)O}(n), (II), and catena-poly[bis[perchloratosilver(I)]-bis{μ(3)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoato}], [Ag(2)(ClO(4))(2)(C(10)H(16)N(2)O(3)S)(2)](n) or [Ag(2)(ClO(4))(2)(HL)(2)](n), (III), respectively. In (II), the Ag(I) cations are again pentacoordinated by three biotin molecules via two S atoms and a ureido O atom, and by two O atoms of a nitrate anion. In (I), (II) and (III), the Ag(I) cations are bridged by an S atom and are coordinated by the ureido O atom and the O atoms of the anions. The reaction of biotin with silver salts of noncoordinating anions, viz. hexafluoridophosphate (PF(6)(-)) and hexafluoridoantimonate (SbF(6)(-)), gave the chiral double-stranded helical structures catena-poly[[silver(I)-bis{μ(2)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoato}] hexafluoridophosphate], {[Ag(C(10)H(16)N(2)O(3)S)(2)](PF(6))}(n) or {[Ag(HL)(2)](PF(6))}(n), (IV), and catena-poly[[[{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoato}silver(I)]-μ(2)-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoato}] hexafluoridoantimonate], {[Ag(C(10)H(16)N(2)O(3)S)(2)](SbF(6))}(n) or {[Ag(HL)(2)](SbF(6))}(n), (V), respectively. In (IV), the Ag(I) cations have a tetrahedral coordination environment, coordinated by four biotin molecules via two S atoms, and by two carboxy O atoms of two different molecules. In (V), however, the Ag(I) cations have a trigonal coordination environment, coordinated by three biotin molecules via two S atoms and one carboxy O atom. In (IV) and (V), neither the ureido O atom nor the F atoms of the anion are involved in coordination. Hence, the coordination environment of the Ag(I) cations varies from AgS(2)O trigonal to AgS(2)O(2) tetrahedral to AgS(2)O(3) square-pyramidal. The conformation of the valeric acid side chain varies from extended to twisted and this, together with the various anions present, has an influence on the solid-state structures of the resulting compounds. The various O-H···O and N-H···O hydrogen bonds present result in the formation of chiral two- and three-dimensional networks, which are further stabilized by C-H···X (X = O, F, S) interactions, and by N-H···F interactions for (IV) and (V). Biotin itself has a twisted valeric acid side chain which is involved in an intramolecular C-H···S hydrogen bond. The tetrahydrothiophene ring has an envelope conformation with the S atom as the flap. It is displaced from the mean plane of the four C atoms (plane B) by 0.8789 (6) Å, towards the ureido ring (plane A). Planes A and B are inclined to one another by 58.89 (14)°. In the crystal, molecules are linked via O-H···O and N-H···O hydrogen bonds, enclosing R(2)(2)(8) loops, forming zigzag chains propagating along [001]. These chains are linked via N-H···O hydrogen bonds, and C-H···S and C-H···O interactions forming a three-dimensional network. The absolute conf
3. Cyclometalated iridium(III) diimine bis(biotin) complexes as the first luminescent biotin-based cross-linkers for avidin
Kenneth Kam-Wing Lo, Jason Shing-Yip Lau Inorg Chem. 2007 Feb 5;46(3):700-9.doi: 10.1021/ic0612202.
Four luminescent cyclometalated iridium(III) diimine complexes [Ir(N-C)2(N-N)](PF6) (HN-C = 2-(4-(N-((2-biotinamido)ethyl)aminomethyl)phenyl)pyridine, Hppy-4-CH2NHC2NH-biotin, N-N = 3,4,7,8-tetramethyl-1,10-phenanthroline, Me4-phen (1a); N-N = 4,7-diphenyl-1,10-phenanthroline, Ph2-phen (2a); HN-C = 2-(4-(N-((6-biotinamido)hexyl)aminomethyl)phenyl)pyridine, Hppy-4-CH2NHC6NH-biotin, N-N = Me4-phen (1b); N-N = Ph2-phen (2b)), each containing two biotin units, have been synthesized and characterized. The photophysical and electrochemical properties of these complexes have been investigated. Photoexcitation of these iridium(III) diimine bis(biotin) complexes in fluid solutions at 298 K and in alcohol glass at 77 K resulted in intense and long-lived luminescence. The emission is assigned to a triplet metal-to-ligand charge-transfer (3MLCT) (d pi(Ir) --> pi*(N-N)) excited state. The emissive states of complexes 1a,b are probably mixed with some 3IL (pi --> pi*) (Me4-phen) character. The interactions of these iridium(III) diimine bis(biotin) complexes with avidin have been studied by 4'-hydroxyazobenzene-2-carboxylic acid (HABA) assays and emission titrations. The potential for these complexes to act as cross-linkers for avidin has been examined by resonance-energy transfer- (RET-) based emission quenching experiments, microscopy studies using avidin-conjugated microspheres, and HPLC analysis.

N-Biotin-N-bis(PEG4-acid), is designed to provide a hydrophilic, flexible polyethylene glycol–based spacer terminating in carboxylic acid functionalities for robust conjugation chemistry. Its biotin-containing motif enables strong affinity-based handling and potential compatibility with biotin-binding workflows used during PROTAC assembly and characterization. The linker’s combination of solubility-enhancing PEG segments and reactive acid handles supports efficient construction of targeted protein degraders; detailed structural and reactivity considerations are provided below.

Structure: The linker contains a biotin core substituted with a tertiary N-connection and two PEG-derived arms ending in carboxylic acid groups. It features ether linkages within the PEG spacers, amide/urea-relevant connectivity at the biotin nitrogen substituent, and multiple ionizable carboxylates that confer water compatibility.

Reactivity: The terminal carboxylic acids are suitable for standard PROTAC linker coupling strategies such as amide-bond formation with amine-bearing ligands using activating reagents (for example, carbodiimides or uronium-type coupling systems) under mildly basic conditions. Typical solvents include polar aprotic media, and the mechanism proceeds via formation of an activated ester/intermediate followed by nucleophilic attack by the ligand amine. Protecting-group strategies may be employed to suppress side reactions when multiple functional groups are present.

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Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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