TD-106

 CAS No.: 2250288-69-6  Cat No.: BP-200022 4.5  

TD-106 is a potent and selective ligand for the E3 ubiquitin ligase cereblon (CRBN), commonly used in PROTAC (Proteolysis Targeting Chimera) drug discovery. This small molecule is engineered to serve as an essential building block in the synthesis of PROTACs, enabling targeted protein degradation by recruiting CRBN to specific disease-related proteins. Falling within the category of E3 Ligase Ligands, TD-106 plays a crucial role in harnessing the cellular ubiquitin-proteasome system for the removal of pathogenic proteins. Its applications range from preclinical research to the development of novel therapeutics in oncology and other fields, where protein homeostasis modulation is a promising therapeutic strategy.

TD-106

Structure of 2250288-69-6

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Category
Ligand for E3 Ligase
Molecular Formula
C12H11N5O3
Molecular Weight
273.25

* For research and manufacturing use only. Not for human or clinical use.

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Popular Publications Citing BOC Sciences Products
Solubility
DMSO : ≥ 125 mg/mL
Storage
Powder<br/>-20°C<br/>3 years<br/><br/><br/> <br/>4°C<br/>2 years<br/><br/><br/>In solvent<br/>-80°C<br/>6 months<br/><br/><br/> <br/>-20°C<br/>1 month
Shipping
Room temperature in continental US; may vary elsewhere
Synonyms
TD-106; TD 106; TD106
Canonical SMILES
NC1=CC=CC(N=NN2C3CCC(NC3=O)=O)=C1C2=O

Background Introduction

TD-106 is a next-generation small-molecule ligand designed to recruit the von Hippel-Lindau (VHL) E3 ubiquitin ligase in targeted protein degradation strategies. As VHL-based ligands have become central building blocks in PROTAC (Proteolysis Targeting Chimera) technology, TD-106's optimized structural features ensure selective binding, efficient recruitment, and superior chemical tractability for PROTAC synthesis, making it highly attractive for drug discovery and development applications.

Mechanism

TD-106 functions as a high-affinity ligand for the VHL E3 ligase, specifically engaging the VHL component of the E3 ubiquitin-protein ligase complex. When incorporated into a bifunctional PROTAC molecule, TD-106 facilitates the proximity-driven ubiquitination of the target protein by recruiting VHL, ultimately triggering proteasomal degradation. The advanced chemical design of TD-106 allows for stable and efficient conjugation with a wide range of target-binding warheads, enhancing the versatility of PROTAC-mediated protein knockdown.

Applications

TD-106 is ideally suited for VHL-based PROTAC design and synthesis, supporting the generation of novel chemical biology tools and therapeutic candidates for research and preclinical development. Key applications include:

• Assembling VHL-targeting PROTACs for degradation of challenging disease-causing proteins
• Structure-activity relationship (SAR) studies and optimization of linker attachments
• Validating biological targets and enabling target deconvolution in cellular assays
• Use as a starting point for custom chemical modifications for specialized projects in academia and biotechnology

TD-106 is widely adopted for its reliability and chemical flexibility in targeted protein degradation research, facilitating innovation in oncology, neurosciences, and beyond.

• High-purity compound verified by HPLC, NMR, and LC-MS
• Consistent batch-to-batch reproducibility with complete QC documentation
• Supplied with COA, MSDS, and analytical data for traceability
• Reliable global shipping with stability-guaranteed packaging
• Dedicated technical support and optional custom synthesis service
• Demonstrates strong binding affinity to CRBN, VHL, or other E3 ligases
• Enables stable E3 ligase recruitment for targeted protein degradation
• Optimized for effective VHL E3 ligase recruitment in targeted protein degradation applications.
• High purity and chemical stability support reliable PROTAC synthesis and biological research.
1. Design and characterization of cereblon-mediated androgen receptor proteolysis-targeting chimeras
Akshay D Takwale, Seung-Hyun Jo, Yeong Uk Jeon, Hyung Soo Kim, Choong Hoon Shin, Heung Kyoung Lee, Sunjoo Ahn, Chong Ock Lee, Jae Du Ha, Jeong-Hoon Kim, Jong Yeon Hwang Eur J Med Chem. 2020 Dec 15;208:112769.doi: 10.1016/j.ejmech.2020.112769.Epub 2020 Aug 26.
Proteolysis-targeting chimera (PROTAC)-mediated protein degradation is a rapidly emerging therapeutic intervention that induces the degradation of targeted proteins. Herein, we report the design and biological evaluation of a series of androgen receptor (AR) PROTAC degraders for the treatment of metastatic castration-resistant prostate cancer. Predominantly, instead of thalidomide, we utilized the TD-106 scaffold, a novel cereblon (CRBN) binder that was identified in our previous study. Our results suggest that the linker position in the TD-106 CRBN binder is critical for the efficiency of AR degradation. The compounds attached to the 6-position of TD-106 promoted better degradation of AR than those at the 5- and 7-positions. Among the synthesized AR PROTACs, the representative degrader 33c (TD-802) effectively induced AR protein degradation, with a degradation concentration 50% of 12.5 nM and a maximum degradation of 93% in LNCaP prostate cancer cells. Additionally, most AR PROTAC degraders, including TD-802, displayed good liver microsomal stability and in vivo pharmacokinetic properties. Finally, we showed that TD-802 effectively inhibited tumor growth in an in vivo xenograft study.
2. Structure-activity relationship analysis of novel GSPT1 degraders based on benzotriazinone scaffold and its antitumor effect on xenograft mouse model
Akshay D Takwale, Eun Yeong Kim, Yerin Jang, Dong Ho Lee, Seulgi Kim, Yuri Choi, Jin Hwan Kim, Da Yeon Lee, Yeongrin Kim, So Myoung Lee, Heung Kyoung Lee, Hye Jin Nam, Joo-Youn Lee, Jin Hwa Cho, Jeong Hee Moon, Ga Seul Lee, Jeong-Hoon Kim, Pilho Kim, Chi Hoon Park, Jong Yeon Hwang Bioorg Chem. 2022 Oct;127:105923.doi: 10.1016/j.bioorg.2022.105923.Epub 2022 Jun 13.
Molecular glue degraders, such as lenalidomide and pomalidomide, bind to cereblon (CRBN) E3 ligase and subsequently recruit neosubstrate proteins, Ikaros (IKZF1) and Aiolos (IKZF3), for the ubiquitination-proteasomal degradation process. In this study, we explored structure-activity relationship analysis for novel GSPT1 degraders utilizing a benzotriazinone scaffold previously discovered as a novel CRBN binder. In particular, we focused on the position of the ureido group on the benzotriazinone scaffold, substituent effect on the phenylureido group, and methyl substitution on the benzylic position of benzotriazinone. As a result, we identified 34f (TD-522), which exhibits strong anti-proliferative effects in both KG-1 (EC50 = 0.5 nM) and TMD-8 (EC50 = 5.2 nM) cell lines. Compound 34f effectively induced GSPT1 degradation with a DC50 of 0.269 nM and Dmax of >95 % at 10 nM concentration in KG-1 cells. An in vivo xenograft study showed that compound 34f effectively suppressed TMD8-driven tumor growth, suggesting a potential role in the development of novel GSPT1 degraders.
3. A novel cereblon modulator for targeted protein degradation
Sung Ah Kim, Ara Go, Seung-Hyun Jo, Sun Jun Park, Young Uk Jeon, Ji Eun Kim, Heung Kyoung Lee, Chi Hoon Park, Chong-Ock Lee, Sung Goo Park, Pilho Kim, Byoung Chul Park, Sung Yun Cho, Sunhong Kim, Jae Du Ha, Jeong-Hoon Kim, Jong Yeon Hwang Eur J Med Chem. 2019 Mar 15;166:65-74.doi: 10.1016/j.ejmech.2019.01.023.Epub 2019 Jan 17.
Immunomodulatory drugs (IMiDs) exert anti-myeloma activity by binding to the protein cereblon (CRBN) and subsequently degrading IKZF1/3. Recently, their ability to recruit E3 ubiquitin ligase has been used in the proteolysis targeting chimera (PROTAC) technology. Herein, we design and synthesize a novel IMiD analog TD-106 that induces the degradation of IKZF1/3 and inhibits the proliferation of multiple myeloma cells in vitro as well as in vivo. Moreover, we demonstrate that TD-428, which comprises TD-106 linked to a BET inhibitor, JQ1 efficiently induce BET protein degradation in the prostate cancer cell line 22Rv1. Consequently, cell proliferation is inhibited due to suppressed C-MYC transcription. These results, therefore, firmly suggest that the newly synthesized IMiD analog, TD-106, is a novel CRBN modulator that can be used for targeted protein degradation.

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* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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