THP-PEG4-Pyrrolidine(N-Me)-CH2OH is a polyethylene glycol–based PROTAC linker featuring a tetraethylene glycol (PEG4) chain that provides conformational flexibility and aqueous solubility, capped with a THP-protected alcohol motif and a N-methylpyrrolidine substituent terminating in a hydroxymethyl group. The linker is designed to spatially separate a ligand for a target protein from a recruiting ligand (e.g., E3 ligase binder), helping to optimize productive ternary-complex formation by tuning linker length, polarity, and local geometry while minimizing steric clashes. In targeted protein degradation workflows, such PEG-containing linkers are commonly used to improve degradation potency and robustness across different ligand pairs by reducing unfavorable intramolecular constraints and supporting favorable linker dynamics. This compound is therefore valuable for constructing PROTACs that require a flexible, hydrophilic spacer and a functional handle for downstream conjugation to compatible warheads or ligands.
Structure of 2378261-81-3
* For research and manufacturing use only. Not for human or clinical use.
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THP-PEG4-Pyrrolidine(N-Me)-CH2OH is a polyethylene glycol–based PROTAC linker featuring a THP-protected alcohol and a tertiary N-methyl pyrrolidine motif. Its ether-rich, flexible scaffold supports favorable ternary-complex formation and improved solubility, while the masked hydroxyl enables controlled conjugation strategies during PROTAC assembly. The following sections describe the linker’s structural characteristics and practical reactivity considerations for constructing targeted protein degraders.
Structure: The linker contains a PEG ether chain providing conformational flexibility and hydrophilicity, coupled to a THP-protected primary alcohol. A N-methyl pyrrolidine ring introduces a tertiary amine center, enabling stable attachment points and tunable polarity. Ether, acetal, and secondary/tertiary amine functionalities define its chemical behavior.
Reactivity: The THP-protected hydroxymethyl group is typically compatible with standard PROTAC synthesis steps that require orthogonal protection. Deprotection to regenerate the alcohol can be achieved under mild acidic conditions or via established acetal-removal protocols, followed by nucleophilic substitution or coupling to install the desired warhead/ligand handle. The tertiary amine supports base-mediated steps, and reactions are commonly performed in polar aprotic solvents with acid/base control to preserve the PEG ether and amine integrity.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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