6-(N-[3-Maleimidopropionamido])hexanoate-succinimide
6-(N-[3-Maleimidopropionamido])hexanoate-succinimide is a bifunctional PROTAC linker building block that combines a succinimide-activated ester with a maleimide-bearing amide arm. Structurally, it contains a flexible hexanoate spacer that separates the reactive handles, enabling controlled conjugation: the succinimide ester readily acylates nucleophilic amines on lysine-containing ligands or protein-binding modules, while the maleimide moiety selectively reacts with thiols (e.g., cysteine residues or engineered thiol groups) to form stable thioether linkages. In targeted protein degradation workflows, this dual-reactivity supports modular construction of PROTAC-like conjugates by sequentially installing one component through amide formation and then coupling a second component via thiol–maleimide chemistry, improving site selectivity and preserving binding pharmacophores. Its practical value lies in facilitating efficient, chemoselective assembly of heterobifunctional degraders and related targeted degradation probes under mild conditions, which is advantageous for optimizing linker length, flexibility, and conjugation stoichiometry.
Structure of 367927-39-7
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6-(N-[3-Maleimidopropionamido])hexanoate-succinimide, is designed to connect a primary amine-bearing ligand to a maleimide-functional partner through a stable amide linkage and a reactive N-hydroxysuccinimide ester handle. Its flexible aliphatic spacing supports productive ternary-complex formation in targeted protein degradation workflows. The following sections describe its structure and the practical reactivity considerations for PROTAC assembly in detail.
Structure: The linker contains a succinimide ester for acyl transfer, an aliphatic hexanoate-based spacer, and an amide-bearing maleimide moiety. It features amide and ester-derived connectivity, with a conjugated maleimide double bond suitable for Michael-type addition. Overall, it is an electrophilic, bifunctional small molecule.
Reactivity: The NHS ester reacts with primary amines under mildly basic aqueous or mixed solvent conditions to form stable amide bonds, typically proceeding via nucleophilic acyl substitution. The maleimide is then used for thiol-directed conjugation through a Michael addition to cysteine or other thiol-containing groups. Commonly, reactions are staged to minimize cross-reactivity, using controlled pH, appropriate buffers, and compatible organic cosolvents; catalysts are generally not required for these coupling steps.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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