Azido-PEG3-phosphonic acid ethyl ester

 CAS No.: 1337527-24-8  Cat No.: BP-500731  Purity: 98% 4.5  

Azido-PEG3-phosphonic acid ethyl ester is a heterobifunctional PEG-based linker featuring a terminal azide handle and a phosphonate moiety protected as an ethyl ester. The PEG3 segment provides a short, water-compatible spacer that can reduce steric interference between a PROTAC warhead and a conjugation partner. In targeted protein degradation workflows, the azide group enables bioorthogonal conjugation strategies (for example, copper-free cycloaddition or related click-type chemistries) to attach the linker to an appropriately functionalized ligand or scaffold. The phosphonate ethyl ester can serve as a chemically versatile functionality for subsequent derivatization or for tuning polarity and binding interactions at the junction region, supporting robust linker installation and purification. This linker is valuable for constructing PROTACs and related degraders where controlled spacing and orthogonal functional handles are required to optimize ternary-complex formation and degradation potency in biochemical and cell-based assays.

Azido-PEG3-phosphonic acid ethyl ester

Structure of 1337527-24-8

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Category
PROTAC Linker
Molecular Formula
C₁₂H₂₆N₃O₆P
Molecular Weight
339.33

* For research and manufacturing use only. Not for human or clinical use.

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Purity
98%
Solubility
DMSO, DCM, DMF
Storage
Please store the product under the recommended conditions in the Certificate of Analysis.
Shipping
Room temperature in continental US; may vary elsewhere.
IUPACName
1-azido-2-[2-[2-(2-diethoxyphosphorylethoxy)ethoxy]ethoxy]ethane
Synonyms
diethyl (2-(2-(2-(2-azidoethoxy)ethoxy)ethoxy)ethyl)phosphonate; diethyl 2-(2-(2-(2-azidoethoxy)ethoxy)ethoxy)ethylphosphonate; 1-azido-2-[2-[2-(2-diethoxyphosphorylethoxy)ethoxy]ethoxy]ethane
InChI Key
FPXYMBISZVJSOJ-UHFFFAOYSA-N
InChI
InChI=1S/C12H26N3O6P/c1-3-20-22(16,21-4-2)12-11-19-10-9-18-8-7-17-6-5-14-15-13/h3-12H2,1-2H3
SMILES
CCOP(=O)(CCOCCOCCOCCN=[N+]=[N-])OCC
1. Poly(2-ethyl-2-oxazoline) Conjugates with Salicylic Acid via Degradable Modular Ester Linkages
Yann Bernhard, Ondrej Sedlacek, Joachim F R Van Guyse, Johan Bender, Zifu Zhong, Bruno G De Geest, Richard Hoogenboom Biomacromolecules. 2020 Aug 10;21(8):3207-3215.doi: 10.1021/acs.biomac.0c00659.Epub 2020 Jul 23.
Conjugation of drugs to polymers is a widely used approach to gain control over the release of therapeutics. In this contribution, salicylic acid, a multipurpose model drug, is conjugated to the biocompatible poly(2-ethyl-2-oxazoline) (PEtOx). The drug is attached to the side chains of a polymer carrier through a hydrolytically cleavable ester linker, via a sequential postpolymerization modification. The chemical modulation of this ester, i.e., by primary or secondary alcohols, is demonstrated to greatly influence the ester hydrolysis rate. This crucial parameter allows us to tune the in vitro kinetics of the sustained drug release for periods exceeding a month in phosphate-buffered saline (PBS). The synthetic accessibility of the cleavable linker, together with the modularity of the drug release rate offered by this approach, highlights the utility of this class of polymers in the field of long-lasting drug delivery systems for persistent and chronic disease treatment.
2. Omega-3 and cardiovascular prevention - Is this still a choice?
Massimiliano Ruscica, Cesare R Sirtori, Stefano Carugo, Philip C Calder, Alberto Corsini Pharmacol Res. 2022 Aug;182:106342.doi: 10.1016/j.phrs.2022.106342.Epub 2022 Jul 4.
There is currently growing attention being paid to the role of elevated triglycerides (TGs) as important mediators of residual atherosclerotic cardiovascular disease (ASCVD) risk. This role is supported by genetic studies and by the persistent residual risk of ASCVD, even after intensive statin therapy. Although TG lowering drugs have shown conflicting results when tested in cardiovascular outcome trials, data from the REDUCE-IT study with the ethyl ester of ω-3 eicosapentaenoic acid (EPA) have revived hope in this area of research. The aim of the present review is to critically discuss the most recent large trials with ω-3 fatty acids (FAs) trying to elucidate mechanistic and trial-related differences, as in the case of REDUCE-IT and STRENGTH studies. The ω-3 FAs may lower cardiovascular risk through a number of pleiotropic mechanisms, e.g., by lowering blood pressure, by mediating antithrombotic effects, by providing precursors for the synthesis of specialized proresolving mediators that can inhibit inflammation or by modulating the lipid rafts enriched in cholesterol and sphingolipids. In conclusion, in a field fraught with uncertainties, the ω-3 FAs and especially high dose icosapent ethyl (the ethyl ester of EPA) are at present a most valuable therapeutic option to reduce the ASCVD risk.
3. Fatty acid ethyl ester from Manilkara zapota seed oil: a completely renewable biofuel for sustainable development
Sathish Kumar Rajamanickam, Sureshkumar Kasinathan Environ Sci Pollut Res Int. 2021 Nov;28(43):61790-61800.doi: 10.1007/s11356-021-15078-9.Epub 2021 Jun 29.
This article reports the deliverables of the experimental study on the production of a completely renewable biofuel from Manilkara zapota fruit and seed oil. It was attempted to synthesis ethyl ester from Manilkara zapota seed oil using bioethanol synthesized from decayed Manilkara zapota fruit. Bioethanol was produced through fermentation of decayed Manilkara zapota fruit, waste skin, and pulp with Saccharomyces cerevisiae and then distilled at 72°C. The bioethanol yield was noted as 10.45% (v/w). The 95.09% pure bioethanol and 4.9% water molecules were present in the distilled sample. Mechanically extracted raw Manilkara zapota seed oil was used for ethyl ester conversion. The molar ratio of bioethanol to oil, the quantity of KOH, and process temperature were investigated for the maximum yield of Manilkara zapota ethyl ester. A 9:1 molar ratio of bioethanol to oil, 1.5% (w/w) KOH, and 70°C process temperature were identified as enhanced ethanolysis process parameters. The maximum yield of ethyl ester was identified as 93.1%. Physicochemical characteristics of Manilkara zapota oil, bioethanol, and ethyl ester were measured as per the corresponding ASTM standards. It was found that both Manilkara Zapota ethyl ester and bioethanol synthesized from decayed Manilkara zapota fruit could be promising substitutes for fossil diesel and gasoline.

Azido-PEG3-phosphonic acid ethyl ester is a versatile PROTAC linker building block designed to connect targeting ligands through a bioorthogonal azide handle while incorporating a phosphonate motif that can support stable conjugation chemistries. Its polyethylene glycol spacer improves solubility and conformational flexibility, which are commonly beneficial for productive ternary complex formation in targeted protein degradation workflows. Detailed structural and reaction guidance is provided below.

Structure: This linker contains an azide functional group attached to a short PEG chain, terminating in a phosphonic acid ethyl ester. It features ether linkages within the PEG segment, an azide-bearing carbon framework, and a phosphonate ester with P–O bonds, providing a polar, water-compatible scaffold.

Reactivity: The azide enables copper-free or copper-catalyzed azide–alkyne cycloaddition for attaching appropriate partners, typically using standard click-chemistry conditions with compatible solvents such as aqueous alcohol mixtures or polar aprotic media. The phosphonate ester can participate in ester-to-acid transformations under controlled hydrolysis conditions when a free phosphonic acid is required, using commonly employed aqueous base or acid catalysis to tune reactivity for subsequent coupling steps.

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It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O c22h30n40
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