Azido-PEG3-phosphonic acid ethyl ester
Azido-PEG3-phosphonic acid ethyl ester is a heterobifunctional PEG-based linker featuring a terminal azide handle and a phosphonate moiety protected as an ethyl ester. The PEG3 segment provides a short, water-compatible spacer that can reduce steric interference between a PROTAC warhead and a conjugation partner. In targeted protein degradation workflows, the azide group enables bioorthogonal conjugation strategies (for example, copper-free cycloaddition or related click-type chemistries) to attach the linker to an appropriately functionalized ligand or scaffold. The phosphonate ethyl ester can serve as a chemically versatile functionality for subsequent derivatization or for tuning polarity and binding interactions at the junction region, supporting robust linker installation and purification. This linker is valuable for constructing PROTACs and related degraders where controlled spacing and orthogonal functional handles are required to optimize ternary-complex formation and degradation potency in biochemical and cell-based assays.
Structure of 1337527-24-8
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Azido-PEG3-phosphonic acid ethyl ester is a versatile PROTAC linker building block designed to connect targeting ligands through a bioorthogonal azide handle while incorporating a phosphonate motif that can support stable conjugation chemistries. Its polyethylene glycol spacer improves solubility and conformational flexibility, which are commonly beneficial for productive ternary complex formation in targeted protein degradation workflows. Detailed structural and reaction guidance is provided below.
Structure: This linker contains an azide functional group attached to a short PEG chain, terminating in a phosphonic acid ethyl ester. It features ether linkages within the PEG segment, an azide-bearing carbon framework, and a phosphonate ester with P–O bonds, providing a polar, water-compatible scaffold.
Reactivity: The azide enables copper-free or copper-catalyzed azide–alkyne cycloaddition for attaching appropriate partners, typically using standard click-chemistry conditions with compatible solvents such as aqueous alcohol mixtures or polar aprotic media. The phosphonate ester can participate in ester-to-acid transformations under controlled hydrolysis conditions when a free phosphonic acid is required, using commonly employed aqueous base or acid catalysis to tune reactivity for subsequent coupling steps.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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