Fmoc-PEG4-NHS ester
Fmoc-PEG4-NHS ester is a heterobifunctional PEG-based linker designed for amide coupling and PROTAC assembly. Structurally, it combines an N-hydroxysuccinimide (NHS) ester reactive handle with a polyethylene glycol chain of four ethylene glycol units, capped by an Fmoc-protecting group that enables orthogonal control during solid-phase or stepwise synthesis. The NHS ester undergoes efficient nucleophilic acyl substitution with primary amines on ligands or warheads, forming stable amide bonds while the PEG spacer increases solubility and reduces steric interference at the ternary complex interface. In targeted protein degradation workflows, this linker can be used to conjugate an E3 ligase binder or a targeting ligand to a complementary component, thereby tuning linker length, flexibility, and effective molarity to support productive recruitment of the target protein. Its PEGylated, chemically robust architecture makes it a practical reagent for constructing modular, experimentally testable PROTAC variants.
Structure of 1314378-14-7
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Fmoc-PEG4-NHS ester is a PEG-based activated linker designed for efficient conjugation in PROTAC construction, enabling the installation of amine-bearing ligands through NHS ester chemistry while preserving linker flexibility and solubility. Its Fmoc group supports orthogonal handling and subsequent functionalization workflows, and the PEG spacer can help tune effective distance and reduce steric constraints between binding elements. The points below describe its structure and practical reactivity for PROTAC assembly.
Structure: The linker contains an NHS-activated carboxylate for acyl substitution, a poly(ethylene glycol) spacer that provides hydrophilicity and conformational flexibility, and an Fmoc-protected aromatic carbamate moiety. It features ester and carbamate functionalities, aromatic rings, and ether linkages typical of PEG-based conjugation reagents.
Reactivity: The NHS ester reacts with primary amines via nucleophilic acyl substitution to form stable amide bonds, a widely used approach for constructing PROTAC intermediates. Conjugations are commonly performed under mildly basic aqueous or mixed solvent conditions to promote amine nucleophilicity while maintaining NHS ester reactivity. No special catalysts are required; careful control of pH, reagent stoichiometry, and NHS ester hydrolysis timing is important. Suitable solvents include buffered aqueous media and compatible co-solvents that dissolve both partners.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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