Bromo-PEG3-phosphonic acid diethyl ester
Bromo-PEG3-phosphonic acid diethyl ester is a heterobifunctional PEG-based linker featuring a terminal alkyl bromide that undergoes SN2 substitution with nucleophiles and a diethyl phosphonate that serves as a protected phosphonate group. The PEG3 segment provides a flexible, hydrophilic spacer that helps reduce steric interference between the two conjugated partners, improving productive formation of the ternary complex typical of PROTAC systems. In PROTAC design, the bromo functionality can be used to attach the linker to nucleophilic residues or to introduce the PEG spacer onto a ligand scaffold, while the phosphonate ester can be de-esterified to a phosphonic acid when that polar functionality is required. This linker is valuable for constructing targeted protein degraders where distance and conformational freedom between the recruiting moiety and the E3-ligase ligand are critical for efficient ubiquitination and degradation.
Structure of 1148026-98-5
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Bromo-PEG3-phosphonic acid diethyl ester is a versatile PEG-based PROTAC linker building block featuring a bromo handle for controlled functionalization and a phosphonate ester motif that supports robust conjugation strategies. Its ether-rich PEG segment can enhance solubility and conformational flexibility in bifunctional degraders, while the phosphonate functionality offers reliable chemical handles for assembling targeted protein degradation constructs. The structure and reactivity considerations for PROTAC synthesis are described in detail below.
Structure: The linker contains a terminal bromo substituent for electrophilic substitution, an ether-rich PEG chain providing flexible, hydrophilic character, and a phosphonic acid diethyl ester group capable of undergoing hydrolysis or further derivatization. It features C–Br, C–O, and P–O bonds, with polar functional groups that influence solubility and stability.
Reactivity: The bromo terminus is suitable for nucleophilic substitution with appropriate nucleophiles under standard organic synthesis conditions, enabling attachment to ligand-bearing intermediates. The phosphonate diethyl ester can be converted to a more reactive phosphonic acid form via ester hydrolysis, or retained for selective coupling depending on the PROTAC design. Common approaches employ inert atmosphere or controlled pH, with solvents such as alcohols or aqueous-organic mixtures, and base or acid catalysts tailored to the chosen transformation.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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