Fmoc-N-amido-PEG3-acetic acid is an Fmoc-protected, PEG-based linker building block featuring a short, hydrophilic oligo(ethylene glycol) spacer terminated with an acetic acid group. Structurally, it combines an N-amido linkage motif with an oligoethylene glycol chain that provides flexibility, aqueous solubility, and reduced steric penalty relative to rigid linkers. In PROTAC and targeted protein degradation constructs, PEG3-containing linkers are commonly used to tune the spatial relationship between the ligand that engages the target protein and the ligand that recruits an E3 ubiquitin ligase, thereby improving productive ternary complex formation and degradation efficiency. The Fmoc group enables stepwise solid-phase or orthogonal synthetic assembly, while the terminal carboxylic acid supports amide coupling to neighboring functional fragments. This product is valuable for researchers optimizing linker length, polarity, and conformational dynamics during PROTAC synthesis and structure–activity studies.
Structure of 139338-72-0
* For research and manufacturing use only. Not for human or clinical use.
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This Fmoc-N-amido-PEG3-acetic acid linker is designed for constructing PROTAC architectures that require a well-defined, hydrophilic polyethylene glycol spacer to modulate solubility, conformational flexibility, and effective spatial presentation of reactive handles. Its amide-linked PEG segment and terminal carboxylic acid support robust coupling strategies commonly used in targeted protein degradation workflows. The detailed structural and reactivity considerations are provided below.
Structure: The molecule contains an Fmoc-protected amide functionality connected to a short PEG chain and a terminal acetic acid group. It features aromatic carbamate (Fmoc), amide and ester-like linkages, and ether-rich PEG segments, yielding a polar, flexible scaffold with hydrogen-bonding capacity and improved aqueous compatibility.
Reactivity: The terminal carboxylic acid can be activated for amide-bond formation with amine-bearing ligands under standard peptide-coupling conditions. The Fmoc group can be removed using base to expose an amine for subsequent conjugation steps. Typical approaches employ coupling reagents that promote carboxyl activation, with polar aprotic solvents and controlled base/acid conditions to preserve sensitive functional groups during PROTAC assembly.
* Our calculator is based on the following equation:
Concentration (start) x Volume (start) = Concentration (final) x Volume (final)
It is commonly abbreviated as: C1V1 = C2V2
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