Mal-PEG4-Glu(TFP ester)-NH-m-PEG24

 CAS No.: 2408741-87-5  Cat No.: BP-501704 4.5  

Mal-PEG4-Glu(TFP ester)-NH-m-PEG24 is a heterobifunctional polyethylene glycol (PEG) linker engineered for PROTAC and targeted protein-degradation conjugation workflows. Structurally, it comprises a maleimide group for chemoselective thiol coupling, a PEG4 spacer, and a glutamate-derived side chain bearing a TFP (tetrafluorophenyl) ester that can react with primary amines to form stable amide bonds; this is further extended by an m-PEG24 segment to provide a long, flexible hydrophilic scaffold. In PROTAC design, the maleimide enables attachment to cysteine-containing ligands or engineered proteins, while the TFP ester facilitates rapid installation of an amine-bearing partner, allowing researchers to build controlled linker architectures that tune effective molarity, intramolecular reach, and overall solubility. Such PEGylated, dual-reactive linkers are valuable for optimizing conjugation efficiency and maintaining favorable pharmacological-like properties during targeted degradation studies.

Mal-PEG4-Glu(TFP ester)-NH-m-PEG24

Structure of 2408741-87-5

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PROTAC Linker
Molecular Formula
C₇₈H₁₃₄F₄N₄O₃₅
Molecular Weight
1763.90

* For research and manufacturing use only. Not for human or clinical use.

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IUPACName
(2,3,5,6-tetrafluorophenyl) 4-[3-[2-[2-[2-[2-[3-(2,5-dioxopyrrol-1-yl)propanoylamino]ethoxy]ethoxy]ethoxy]ethoxy]propanoylamino]-5-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-(2-methoxyethoxy)ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethylamino]-5-oxopentanoate
InChI Key
CSFNMNXCDRHNCL-UHFFFAOYSA-N
InChI
InChI=1S/C78H134F4N4O35/c1-93-14-15-97-22-23-101-28-29-103-32-33-105-36-37-107-40-41-109-44-45-111-48-49-113-52-53-115-56-57-117-60-61-119-64-65-120-63-62-118-59-58-116-55-54-114-51-50-112-47-46-110-43-42-108-39-38-106-35-34-104-31-30-102-27-26-100-21-18-96-13-9-84-78(92)69(2-5-74(91)121-77-75(81)67(79)66-68(80)76(77)82)85-71(88)7-11-94-16-19-98-24-25-99-20-17-95-12-8-83-70(87)6-10-86-72(89)3-4-73(86)90/h3-4,66,69H,2,5-65H2,1H3,(H,83,87)(H,84,92)(H,85,88)
SMILES
COCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCNC(=O)C(CCC(=O)OC1=C(C(=CC(=C1F)F)F)F)NC(=O)CCOCCOCCOCCOCCNC(=O)CCN2C(=O)C=CC2=O
1. A tetrafluorophenyl activated ester self-assembled monolayer for the immobilization of amine-modified oligonucleotides
Matthew R Lockett, Margaret F Phillips, Jessica L Jarecki, Dora Peelen, Lloyd M Smith Langmuir. 2008 Jan 1;24(1):69-75.doi: 10.1021/la702493u.Epub 2007 Nov 30.
A tetrafluorophenyl (TFP) ester-terminated self-assembled monolayer (SAM) for the fabrication of DNA arrays on gold surfaces is described. Activated ester SAMs are desirable for biomolecule array fabrication because they readily react with amine-containing molecules to form a stable amide linkage. N-Hydroxysuccinimide (NHS) ester SAMs are commonly used for this purpose but are subject to a competing hydrolysis side reaction, limiting their effectiveness under basic conditions. TFP was evaluated here as an alternative activated ester leaving group with a potentially greater stability under basic conditions. It is shown that TFP SAMs are much more stable to basic pH than their NHS analogs and are also more hydrophobic, which is an advantage in the fabrication of high-density spotted arrays. DNA arrays prepared on TFP SAMs at pH 10 have a 5-fold greater surface density of DNA molecules, reduced fluorescence background, and smaller spot radii than those prepared on NHS SAM analogs.
2. PET/CT Imaging of 89Zr-N-sucDf-Pembrolizumab in Healthy Cynomolgus Monkeys
Wenping Li, Yuchuan Wang, Daniel Rubins, Idriss Bennacef, Marie Holahan, Hyking Haley, Mona Purcell, Liza Gantert, SuChun Hseih, Michael Judo, Wolfgang Seghezzi, Shuli Zhang, Elly L van der Veen, Marjolijn N Lub-de Hooge, Elisabeth G E de Vries, Jeffrey L Evelhoch, Michael Klimas, Eric D Hostetler Mol Imaging Biol. 2021 Apr;23(2):250-259.doi: 10.1007/s11307-020-01558-w.Epub 2020 Oct 26.
Purpose:Programmed cell death-1 receptor (PD-1) and its ligand (PD-L1) are the targets for immunotherapy in many cancer types. Although PD-1 blockade has therapeutic effects, the efficacy differs between patients. Factors contributing to this variability are PD-L1 expression levels and immune cells present in tumors. However, it is not well understood how PD-1 expression in the tumor microenvironment impacts immunotherapy response. Thus, imaging of PD-1-expressing immune cells is of interest. This study aims to evaluate the biodistribution of Zirconium-89 (89Zr)-labeled pembrolizumab, a humanized IgG4 kappa monoclonal antibody targeting PD-1, in healthy cynomolgus monkeys as a translational model of tracking PD-1-positive immune cells.Procedures:Pembrolizumab was conjugated with the tetrafluorophenol-N-succinyl desferal-Fe(III) ester (TFP-N-sucDf) and subsequently radiolabeled with 89Zr. Four cynomolgus monkeys with no previous exposure to humanized monoclonal antibodies received tracer only or tracer co-injected with pembrolizumab intravenously over 5 min. Thereafter, a static whole-body positron emission tomography (PET) scan was acquired with 10 min per bed position on days 0, 2, 5, and 7. Image-derived standardized uptake values (SUVmean) were quantified by region of interest (ROI) analysis. Results:89Zr-N-sucDf-pembrolizumab was synthesized with high radiochemical purity (> 99 %) and acceptable molar activity (> 7 MBq/nmol). In animals dosed with tracer only, 89Zr-N-sucDf-pembrolizumab distribution in lymphoid tissues such as mesenteric lymph nodes, spleen, and tonsils increased over time. Except for the liver, low radiotracer distribution was observed in all non-lymphoid tissue including the lung, muscle, brain, heart, and kidney. When a large excess of pembrolizumab was co-administered with a radiotracer, accumulation in the lymph nodes, spleen, and tonsils was reduced, suggestive of target-mediated accumulation.Conclusions:89Zr-N-sucDf-pembrolizumab shows preferential uptake in the lymphoid tissues including the lymph nodes, spleen, and tonsils. 89Zr-N-sucDf-pembrolizumab may be useful in tracking the distribution of a subset of immune cells in non-human primates and humans.Trial registration:ClinicalTrials.gov Identifier: NCT02760225.
3. Fully automated peptide radiolabeling from [18F]fluoride
Ryan A Davis, Chris Drake, Robin C Ippisch, Melissa Moore, Julie L Sutcliffe RSC Adv. 2019 Mar 15;9(15):8638-8649.doi: 10.1039/c8ra10541c.eCollection 2019 Mar 12.
The biological properties of receptor-targeted peptides have made them popular diagnostic imaging and therapeutic agents. Typically, the synthesis of fluorine-18 radiolabeled receptor-targeted peptides for positron emission tomography (PET) imaging is a time consuming, complex, multi-step synthetic process that is highly variable based on the peptide. The complexity associated with the radiolabeling route and lack of robust automated protocols can hinder translation into the clinic. A fully automated batch production to radiolabel three peptides (YGGFL, cRGDyK, and Pyr-QKLGNQWAVGHLM) from fluorine-18 using the ELIXYS FLEX/CHEM® radiosynthesizer in a two-step process is described. First, the prosthetic group, 6-[18F]fluoronicotinyl-2,3,5,6-tetrafluorophenyl ester ([18F]FPy-TFP) was synthesized and subsequently attached to the peptide. The [18F]FPy-peptides were synthesized in 13-26% decay corrected yields from fluorine-18 with high molar activity 1-5 Ci μmol-1 and radiochemical purity of >99% in an overall synthesis time of 97 ± 3 minutes.

This Mal-PEG4-Glu(TFP ester)-NH-m-PEG24 linker is designed for constructing PROTACs by providing orthogonal, chemoselective handles that support efficient conjugation of targeting ligands. Its PEG-rich architecture promotes favorable solubility and spacing, while the glutamate-derived TFP ester enables controlled formation of stable amide linkages under mild conditions. The subsequent points describe the linker’s structure and practical reactivity considerations for PROTAC assembly.

Structure: The linker comprises a maleimide moiety, a PEG4 segment, a glutamate unit bearing a TFP-activated carboxylate, and an additional m-PEG24 chain connected through ether linkages. It contains amide-forming functional groups and an electrophilic maleimide for selective Michael-type coupling, with overall high hydrophilicity.

Reactivity: PROTAC construction using this linker typically leverages two complementary chemistries: the maleimide undergoes nucleophile-triggered Michael addition with thiols under aqueous, mildly basic conditions, while the TFP ester reacts with primary amines to form amide bonds via acyl substitution. Common approaches employ buffered aqueous solvents, controlled stoichiometry, and temperature management to preserve maleimide integrity and minimize side reactions; catalysts are generally not required.

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It is commonly abbreviated as: C1V1 = C2V2

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Tip: Chemical formula is case sensitive. C22H30N4O √ c22h30n40 ╳
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